Representation Learning in Biology

Representation Learning in Biology is a special session @ ISMB2021

[Christian Dallago @sacdallago]

A collection of articles on machine learning for protein science and engineering: who would you like to hear from and on what topics?

[Representation Learning in Biology @RepLearningBio]

@MlcsbC @MagnusRattray @cazencott @sayaneshome Hello big brother

[Representation Learning in Biology @RepLearningBio]

Great discussion on protein LMs with @alexrives , @KevinKaichuang , @thisismadani , @y_bromberg , @rostlab happening now...

All in one room!

Join now!!!

https://t.co/D46fNivJC7 (passcode: 4444)

[Representation Learning in Biology @RepLearningBio]

Thank you all for making this such a great session!

We are not done yet! Join us in 25 minutes for our first "get to know each other" and live QA via Zoom. Details here: https://t.co/DWBgdP92Dd

[Aditi Shenoy @aditiashenoy]

Embeddings differentiate between homologous and non-homologous sequences irrespective of sequence similarity @y_bromberg @RepLearningBio #ISCB2021

[Representation Learning in Biology @RepLearningBio]

@xinformatics @aditi_shenoy @alexrives All ISMB talks will be made available on youtube in a few months, I believe. We'll investigate and update our webpage with the info

[Representation Learning in Biology @RepLearningBio]

Want to ask @alexrives about ESM1(b/v/...)? Or @countablyfinite about how potts relate to protein embeddings? Or any other of our amazing speakers about their work?

‼️ JOIN our QAs later today: https://t.co/DWBgdP92Dd

[Karl Kremling @hauteHominy]

Great talks today at @RepLearningBio
https://t.co/SfFuJxNddL
Thanks to the organizers @pkoo562 @AnanthanNambiar @sacdallago @thisismadani for having us (@Inari_Ag) as a sponsor.
If you're interested in applying NLP and image models to bio sequences, please DM me, we're hiring

[Aditi Shenoy @aditiashenoy]

Interesting talk by @alexrives at @RepLearningBio on moving from multi-stage pipelines for individual protein prediction tasks to using single protein language models for multiple prediction tasks - remote homology, secondary structure, contacts & more! #ISCB2021

[Representation Learning in Biology @RepLearningBio]

First talk by @KevinKaichuang happening now. Great overview of protein representation learning!

[Representation Learning in Biology @RepLearningBio]

‼️ We have finalized our schedule ‼️

Check it out: https://t.co/T3pth84P72

Mind: we had a little glitch in our scheduling links and talks were reportedly starting 2h ahead of their actual start time! We apologize for the inconvenience!

🚀 Session starts at 11AM UTC

[Representation Learning in Biology @RepLearningBio]

And very grateful to @Dyno_Tx , @Inari_Ag & @MSFTResearch for their generous support!

[Representation Learning in Biology @RepLearningBio]

Are you excited for our session coming Sunday? 😍

We have an awesome speaker lineup: https://t.co/T3pth84P72

DO make sure to fill out the "would like to attend" form ( https://t.co/An3pUls5CN) even if you won't participate at ISMB so we can share the news of the day with you!!

[Representation Learning in Biology @RepLearningBio]

Looking forward to talks by @MariaRoCompBio @KevinKaichuang @rbhar90 @countablyfinite @HannesStaerk @ewa_szczurek @SurabhiJagtap @jlistgarten @rbhar90 @hyami3 @farhand7 @danofer @mkuchroo @KrishnaswamyLab @alexrives @egbert_castro @rostlab

[Peter Koo @pkoo562]

@RepLearningBio Thank you sponsors!!! @Dyno_Tx @Inari_Ag @MSFTResearch

[Representation Learning in Biology @RepLearningBio]

We are happy to announce that 9 participants were raffled and will be awarded an ISMB/ECCB 2021 registration.

We hope to see them at our session and thank both our sponsors and speakers for helping us enabling them!

[Representation Learning in Biology @RepLearningBio]

‼️ LAST FEW HOURS ‼️

Participate *NOW* to get a chance to win a ticket to ISMB/ECCB 2021 & our special session!

🔗 https://t.co/Q7xmLxhtG3

[Representation Learning in Biology @RepLearningBio]

... and a chance to meet our awesome speakers: @MariaRoCompBio @KevinKaichuang @rbhar90 @countablyfinite @HannesStaerk @ewa_szczurek @SurabhiJagtap @jlistgarten @rbhar90 @hyami3 @farhand7 @danofer @MariaRoCompBio @mkuchroo @KrishnaswamyLab @alexrives @egbert_castro @rostlab

[Representation Learning in Biology @RepLearningBio]

‼️ LAST FEW HOURS ‼️

Participate *NOW* to get a chance to win a ticket to ISMB/ECCB 2021 & our special session!

🔗 https://t.co/Q7xmLxhtG3

[Representation Learning in Biology @RepLearningBio]

@serghei_mangul Low-income is easier to "quantify", and also what ISMB/ECCB has inbuilt, so this counts towards our "marginalized".

We'll also try to apply some heuristic beyond location. Will not be perfect as we are human, but we will try our best to get it right!

[Representation Learning in Biology @RepLearningBio]

You have not registered to ISMB/ECCB but would like to learn about representation learning in biology?

Good news! We are raffling free registrations particularily aimed at students from marginalized backgrounds!

Paritipate in the raffle *TODAY*!

https://t.co/Q7xmLxhtG3