Sam Old

Bioinformatician in Immunology & Cytometry. Malaghan Institute

[Sam Old @SameOld_SamOld]

@wolfgangkhuber Could you use this to host shiny apps instead of using https://t.co/diABBKh5fy?

[Sam Old @SameOld_SamOld]

@Rarghwoolf And what about adults?!

[Sam Old @SameOld_SamOld]

@schotz Yeah I tried it for some scrna and flow cytometry stuff but it keeps making up random functions or renaming them. You need to spend some time finding the real functions, which is not the best time saver.

[Stat.ML Papers @StatMLPapers]

Stop using the elbow criterion for k-means and how to choose the number of clusters instead. (arXiv:2212.12189v1 [https://t.co/zjV5HgYw5a]) https://t.co/LW4nDaOE9A

[Joel Nitta @joel_nitta]

Be careful with this R stuff kids. It starts with just wanting to analyze some data, then before you know it you're trying to figure out how to deploy dockerized shiny apps.

[Sam Old @SameOld_SamOld]

@bioinformer @PNgsabrina They are zero vs one, zero vs two, zero vs three... counts.
Need to not use raw p-value here, lfc shrinkage, more for QC.

[Sam Old @SameOld_SamOld]

@cararthompson I'll try scattermore! I think I previously used geom_hex with a large amount of hexes for >10mil points

[Sam Old @SameOld_SamOld]

@data_question Wow, I always made ggplots in a for loop, this is way better!

[Sam Old @SameOld_SamOld]

@rbjanis5 dplyr::filter

I frequently get collision problems with filters from several packages.

Also pheatmap::pheatmap()

[Federico Marini 🦋@federicomarini.bsky.social @FedeBioinfo]

🥳Finally out!!! 🥳
... and with a timing that could not have been better (thanks to the editors @BioMedCentral!) to wish me, @AnnekathrinLudt and all of you a pleasant Christmas time - while you wait for Jan2022 to analyze in depth your RNA-seq data🤗🧬🍹
https://t.co/9BO3SzBM0j

[COMBINE @combine_au]

Are you:
✅ An Australian (or NZ 👀) bioinformatics student?
✅ Looking to expand your network?
✅ Keen to organise fun social events?
✅ Passionate about bioinformatics education?

Apply to join the COMBINE Committee for 2022!
https://t.co/BixY6IvLH1

[franca ronchese @francaronchese]

If the 27+ pages at https://t.co/i4lyqSUJA6 seem too much, here is a summary of the main points 🙂(finally)😉
#Immunology #Allergies #ILC2 @DCell_papers 1/8

[Stephen Turner 🦋 @stephenturner.us @strnr]

Move over banana Venn

[Nature Immunology @NatImmunol]

Mayer et al. show a homeostatic circuit of IL-13, dermal ILCs and CD11b-lo DC2 cells support the development of TH2 cells and curtails the development of TH17 cells in the skin of mice and humans.
https://t.co/V2MgncndsZ @francaronchese @JohannesUMayer

[Sam Old @SameOld_SamOld]

@melissaboardman I ran into a pair on the walk to Butterfly Creek lately! So fun to see them in the wild after following your posts.

[Sam Old @SameOld_SamOld]

@kerryhilligan @Malaghan_Inst @royalsocietynz @francaronchese Awesome!

[Sam Old @SameOld_SamOld]

@mobeginomics @tpq__ So very soon! We are currently going through some revisions before it is published on https://t.co/Fah7f4mm9f

[Sam Old @SameOld_SamOld]

@C_L_Bridges @sbrookbrooks Dwindling fan these days, but ye!

[franca ronchese @francaronchese]

Thrilled to see our recent work featured in a Preprint Watch Journal Club by Mattiuz & @MiriamMerad on @NatRevImmunol !! 😊