Stemformatics

Stemformatics is a web based tool that allows stem cell biologists to visually analyse and explore interesting 'omic datasets.

[Stemformatics @Stemformatics]

Have you seen the new https://t.co/SXIDfBsQ4m integrated transcriptome atlases for blood cells? https://t.co/edtu9OcCj2

#DataScience #RNA #Blood #CellClassification #GeneExpression

[John Ouyang @imouyang]

Will be speaking on single-cell analysis of stem cell reprogramming!

[Priyanka Nair-Turkich @pri_nairturkich]

Thank you @mincle @Stemformatics @jarnychoi Our multi-disciplinary team of research data specialists throughly enjoyed working with you and we are thrilled to see the new portal! We look forward to more opportunities in the future! @MDAP_Unimelb

[Irene Papatheodorou - Ειρήνη Παπαθεοδώρου @irenepapatheodo]

Always love talking about @ExpressionAtlas

[Dr Simone Webb @SimSci9]

Our perspective piece on the @humancellatlas

'A roadmap for the Human Developmental Cell Atlas'

is out now, *open-access*: https://t.co/j0B1ARtMxD.

A learning curve! Provided me with much needed space to learn from leaders in this field and think on the bigger picture

[Zahra Elahi @Zahra_elaahi]

Excited to share that human Dendritic Cell atlas has been revealed by the updated version of @Stemformatics .
It's coming from the first year of my PhD research.

Check it out!

[Melbourne Data Analytics Platform (MDAP) @MDAP_Unimelb]

We're hiring! Do you have a PhD or equivalent experience in a #dataIntensive #research field in the #Humanities and #SocialSciences? Then join the most amazing #interdisciplinary and #collaborative team of academics (not biased at all😜) Find out more: https://t.co/nm2TPMhu3t

[Stemformatics @Stemformatics]

so we welcome suggestions and feedback - contact us on the site, or via @jarnychoi or @mincle

[Stemformatics @Stemformatics]

Stemformatics was developed for collaborative communities, initially for @StemCellsAus and now with @Synnate1

[Stemformatics @Stemformatics]

Find out how similar your data is to the curated samples in the blood, myeloid or DC atlas (we use capybara, https://t.co/Gx3Ghbt3n1)

[Stemformatics @Stemformatics]

Use the curated bulk data to annotate immune cells in your single cell datasets - easy to follow vignettes on the https://t.co/w2L2a04hRi site

[Stemformatics @Stemformatics]

subset experimental categories to reveal reproducible expression patterns - like IL6 production by macrophages, but not some dendritic cell subsets, in response to gram-negative bacteria

[Stemformatics @Stemformatics]

You can explore gene expression across the hundreds of samples that contribute to our curated atlas collections https://t.co/w2L2a04hRi

[Stemformatics @Stemformatics]

We've built collections of transcriptome data from whole blood to tissue myeloid biology or dendritic cell subsets

[Stemformatics @Stemformatics]

We updated our data explorer with help from @MDAP_Unimelb - interactive categories, quickly get to the details of our curated metadata.

[Stemformatics @Stemformatics]

You can find tissues where your gene of interest is most commonly observed https://t.co/w2L2a04hRi