Antonin Marchais

Interested in Integrative biology, RNA biology, Data science, Omics ending words, Evolution, Oncology, Immunity, Microbiology, Virology ...

[Bioinformatics Advances @BioinfoAdv]

🛠️ The CellsFromSpace R package is now available on GitHub. Dive into the tutorials and documentation to get started with your spatial transcriptomics analysis today! #OpenSource #Bioinformatics #RStats https://t.co/X2v6KVMFK6

[Bioinformatics Advances @BioinfoAdv]

Exciting news in spatial transcriptomics! 📊🧬 Check out "CellsFromSpace: Independent Component Analysis Framework for Spatial Transcriptomics" for a novel way to analyze spatial data and identify cell types. 🔍✨ #Bioinformatics #SpatialTranscriptomics #Genomics https://t.co/uCZaA0Yurl @Tebalde0 @GaelMoquin @KarkarSlim

[Antonin Marchais @Tebalde0]

@J4CKFR0HST @samuelabbou @GroupeUnicancer @laliguecancer @GustaveRoussy Join us in the FOSTER consortium @FosterConsorti1 (https://t.co/X0vZ5ODFDW) to fast-track osteosarcoma research! We have open post-doc positions (https://t.co/ut06fnpwk1). DM for details.
To support our cause, consider donating here: https://t.co/yr8v44pVKz

[Antonin Marchais @Tebalde0]

Excited to share our latest work on improving osteosarcoma patient care! Our study explores how ctDNA quantification via a simple blood test could revolutionize prognostic factors. Check out the findings from the OS2006 trial here: https://t.co/a7f7lWMeRf

[Antonin Marchais @Tebalde0]

Kudos to Baptiste Audinot @J4CKFR0HST , Dr. Damien Drubay, and Dr. Samuel Abbou @samuelabbou (PI of the study) for their invaluable contributions. Big thanks to @GroupeUnicancer , @laliguecancer , and La fondation @GustaveRoussy for their support.

[FabriceAndre @FAndreMD]

.@GustaveRoussy retreat about Research in Childhood cancers to prepare the future: which fingerprint for our research ? which priorities for basic science ? Which depth of data for epidemiology studies ? Which strategy for clin research ? How to translate discoveries to pts ?

[Antonin Marchais @Tebalde0]

@gunsnrosesgirl3 Courage

[Roelof van Ewijk @Roelofve]

Now online! How should we move forward investigating new medicines in patients with recurrent osteosarcoma? https://t.co/k0dlAyLebS
@FosterConsorti1 @herolnikol @poppendokter @Manupalmerini @Tebalde0 @kjetilboye

[Antonin Marchais @Tebalde0]

Great to see this essential work from Marco (Grill and Castel team, @GustaveRoussy) out in @JNeurooncol
https://t.co/ccHherr1ij
For french speaker:
Mécanismes responsables de l'invasion de... https://t.co/gXFL2YlbJA via @scoopit

[Antonin Marchais @Tebalde0]

@MaartenvSmeden Questions or hypotheses ? Multivariate analyses stresses your hypotheses, according to the present knowledge ? Should we go for something else ?

[Antonin Marchais @Tebalde0]

@markowetzlab Great question ! Why ? What are we looking at when analysing past events ?Dynamic system in different organs behave differently ? Are we under looking at the extrinseque or the intrinseque plasticity ?
Open minds and increases of the size of cohorts are the keys.

[Florian Markowetz @markowetzlab]

I completely agree - exactly what I see in cancer. So much work on phylogenies, clonal expansions, subclonal drivers - all great science. And useless when treating patients.

[bioRxiv @biorxivpreprint]

CellsFromSpace: A versatile tool for spatial transcriptomic data analysis with reference-free deconvolution and guided cell type/activity annotation https://t.co/IDMsWnpqWr #bioRxiv

[Antonin Marchais @Tebalde0]

Resistance is futile! Embrace the CFS invasion and conquer spatial transcriptomics! 😄
#SpatialTranscriptomics

[Antonin Marchais @Tebalde0]

🛸🌍Invasion Update: Introducing CellsFromSpace post #ISMB2023!
CFS is a user-friendly framework for spatial transcriptomics on any tech platform
Shiny app for non-bioinformaticians
No need for single cell atlases
@GustaveRoussy @10xGenomics @nanostringtech @vizgen_inc
1/n

[bioRxiv Bioinfo @biorxiv_bioinfo]

CellsFromSpace: A versatile tool for spatial transcriptomic data analysis with reference-free deconvolution and guided cell ... https://t.co/kecDtSIz4q #biorxiv_bioinfo

[Antonin Marchais @Tebalde0]

Stay tuned for updates! We're working on improving the shiny app and diving into cell neighborhoods, trajectories, and time series. https://t.co/F1OoykHteE

[Antonin Marchais @Tebalde0]

@mick17000 @10xGenomics @vizgen_inc @nanostringtech @GustaveRoussy @Institut_cancer @BMSFrance @Inserm Tutorial and preprint are coming very soon, you can already play with CFS : https://t.co/cYR2WzukDz

[Antonin Marchais @Tebalde0]

Glad to share CellsFromSpace at #ISMBECCB2023 to analyse spatial data (@10xGenomics, @vizgen_inc, @nanostringtech,...) , WO reference SC Atlas : Spot decomposition,guided annotation &more. Talk at 5pm by the amazing C. Thuilliez
@GustaveRoussy @Institut_cancer @BMSFrance @Inserm