Interested in how metabolism shapes the tissue environment?
We introduce Harreman, an algorithm and open-source software to infer metabolic exchanges directly from spatial transcriptomics.
To learn more, check out @EtxezarretaOier's tweetorial below! 👇🧵
🚀 I'm excited to share our new method called Harreman - an open-source algorithm from the @YosefLab to infer metabolic exchanges directly from spatial transcriptomics data.
https://t.co/XeSAe236VI
🧵👇
To kick off the Computational Spatial Biology seminar series with @nathan_levyy, we will be discussing LUNA with @yistyu. LUNA is a generative AI model that reassembles complex tissue structures from gene expressions of cells.
Tune in next Wednesday, April 9 @ 11AM ET!
Announcing the Computational Spatial Biology seminar!
With @justjhong, we’re bringing together researchers at the intersection of AI & spatial biology to share their work.
Kicking off April 9th with Yist Yu presenting LUNA!
Explore the lineup here:
https://t.co/0GPYU23Z5N
Tomorrow at 2024-11-12 18:00 CET will be another community meeting!
@_canergen will talk about about Scvi-hub, a repository for model-based analysis of single-cell genomic data. For more information check the Biorxiv paper: https://t.co/qg2P338Ux1
Last sunset before we kick off #SCG24!
Truly excited to engage with the global single cell family.
Wondering about what Harreman, Nativ and CytoVI mean? Come by our posters!
Dear community, we hope you are safe these days🙏
Towards our meeting, don’t miss the chance to share your sc-ience, poster submission deadline is coming up, Aug. 29th⌛️.
👉 https://t.co/vKgKwpqDRU
Looking forward to seeing you Sept, 26th, 10AM @ELSCbrain, Givat Ram, JLM.
Aging is a complex process, and one of its hallmarks is the accumulation of senescent cells. These cells, while once healthy, have become damaged and dysfunctional.
But why do they stick around? 🤔
Our new research sheds light on this! #aging#senescentcells#aging #immunotherapy
@JuliaMMagdalena@KrizhanovskyLab@UriAlonWeizmann@WeizmannScience https://t.co/mNZ10CVuv8
SCG2024 program is now online! 🔥 https://t.co/22F7CM9uXm
Continuing our tradition with never heard before-unpublished work in the leading edge of single cell biology, analysis and technology.
How can we better reveal cellular 🦠and sample🧍variation from large-scale scRNA-seq studies? We have released a new and improved deep generative model, #MrVI, in scvi-tools and on bioRxiv, accompanied by real-world use cases. A thread... 🧵1/
https://t.co/l1ArpNVHWV
The lab is in full bloom as we gather in Berkeley and Israel to toast the arrival of spring and joyous Purim!
Celebrating our collective achievements over delicious food and great company ☀️🎉
We are hiring a software engineer! An amazing opportunity to join our team - be at the core of the development and maintenance of our open-source Python packages, engage with the single-cell omics community within the @scverse_team consortium and beyond!
https://t.co/jBHeVvwfEx
Are you an international PhD graduate interested in doing a postdoc at @WeizmannScience ?
Don’t miss the opportunity to apply to the Azrieli fellowship. Conduct research at a leading Israeli university and become part of a network of top-tier scientists!
Attention international postdocs:
Applications for the Azrieli International Postdoctoral Fellowship are now being accepted and are due by May 9!
The Azrieli International Postdoctoral Fellowship supports the best and brightest minds in their postdoctoral research in Israel, connecting them with world-class academics and leading researchers.
Please note that candidates are required to have an academic sponsor, who is a faculty member at an eligible Israeli academic institution.
@azrielifdn
Excited to announce the release of scvi-tools v1.1 today! We’re including various new features, models, and critical bug fixes in this release, some of which I will highlight in this thread:
https://t.co/aFsPVhv5d3
Excited to share our study on how aging affects the human immune system at different tissues, with single cell genomics.
Fantastic teamwork with @psimslab, Jo Jones, @DonnaFarber3 and @teichlab; and with Cambridge CBTM and @liveonny.
Fresh on bioRxiv: https://t.co/QVMeTVbUT9
🚨1/ New to CZ #CELLxGENE: models & embeddings that integrate up to 36M cells in the Census corpus.
Use embeddings to explore the corpus directly, or download the models to run your own data through them to enable direct comparisons to the reference. 🧵
https://t.co/VILS665Gnl
Hi! We have just released VI-VS, a new framework for exploring molecular dependencies in multi-omics. It combines deep learning and rigorous statistical inference to provide interpretable discoveries with high predictive power.
https://t.co/iOew93i2uJ
Expanded Yosef Lab meeting at the SCG conference this week!
In his talk Nir presented mrVI, a deep generative model for analyzing sample-level heterogeneity in single-cell RNA-seq datasets. Find out more:
https://t.co/IreCYa18MA
veloVI enhances RNA velocity analysis with uncertainty quantification and extensibility by deep generative modeling of gene-specific transcriptional dynamics. @adamgayoso @PhilippWeiler7 @fabian_theis@YosefLab
OA paper: https://t.co/rf8K60Xi8o