single cell network Israel (scIL)

Connecting Israeli researchers using & developing single cell technologies.
#singlecell #Israel

[single cell network Israel (scIL) @singlecell_il]

Living and breathing single-cells 🦠 but sometimes feel a bit single 👩‍💻?
Want to know the faces behind the papers? 📃
Looking for people to speak about the recent controversial tweet 🐘🎨?
Can’t wait to share your success (and failures) in reproducing results ? (1/4)

[single cell network Israel (scIL) @singlecell_il]

Check out this work from our network —uncovering network motifs in single-cell spatial data! 🫟
@zamir_amos @leeat_keren @AssafZaritsky

[Assaf Zaritsky @AssafZaritsky]

Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data.

https://t.co/CpoZWFjKZH

🧵

1/n

[Rahul Satija @satijalab]

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on April 25. Talks will feature recent exciting computational and experimental advances and will be live-streamed at https://t.co/zG98gkckMU. Please RT/spread the word!

[Kexin Huang @KexinHuang5]

🧬GWAS is fundamental in drug discovery, linking disease to genetic variants. However, studying rare and uncommon diseases with GWAS is hard due to the huge sample sizes required. How can we use AI to help GWAS with small cohorts?

In a multi-year collaboration @GSK @StanfordAILab @StanfordMed @SCSatCMU, we are thrilled to share Knowledge Graph GWAS (KGWAS), the largest AI model that integrates >10 millions of multi-modal and multi-scale functional genomics data to improve GWAS power by 100% while discovering novel disease-critical variants, genes, cells, and networks!

A huge shoutout to our stellar team of AI, statistics, and human genetics scientists: @tkyzeng Soner Koc, Alexandra Pettet @zhou_jingtian @MikaSarkinJain Dongbo @_camiloruiz @ren_hongyu @laurencejmshowe Tom Richardson, Adrián Cortés, Katie Aiello, Kim Branson, @apfenning @jengreitz @martinjzhang @jure

Paper: https://t.co/t0tAratBZI

1/15🧵

[single cell network Israel (scIL) @singlecell_il]

Congratulations @AssafZaritsky !

[allen institute @AllenInstitute]

How do organelles change over the course of a stem cell’s life?

@cohenlaboratory, @AssafZaritsky, and @mattersOfLight are using machine learning and cell engineering to study the impact of organelle-organelle interactions on stem cell differentiation. #FrontierScience

[Hebrew University @HebrewU]

New study by Dr. @Naomi_habib and @GreenGilad from #HebrewU, in collab with researchers from @Columbia and @Harvard, uncovers two distinct cellular paths in brain aging—one leading to Alzheimer’s and the other to healthy aging—paving the way for personalized treatments.

For the full article 👇
https://t.co/HbgRuWeHrl

[single cell network Israel (scIL) @singlecell_il]

Due to the escalating situation, limiting participation of many in the community, we decided to postpone the in-person event.💔
We will have a zoom on Thursday (26/9) 10-11AM, as an intro to community, w/ talk by @SItzkovitz, and challenges overview by @naomi_habib & @mor_nitzan

[single cell network Israel (scIL) @singlecell_il]

We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅
w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz.
A field overview by @mor_nitzan & @naomi_habib, and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab

[single cell network Israel (scIL) @singlecell_il]

We are excited to share the agenda for our 1st annual event, 26/9 @ELSCbrain🪅
w/ spotlights 🔦@YOrenLab, Amos Tanay, @yizhaklab, @atownfool & @SItzkovitz.
A field overview by @mor_nitzan & @naomi_habib, and sc-ience sessions led by @bitonm, Oren Ram, @YosefLab & @OCohenlab

[Gilad Green @GreenGilad]

Thrilled our work is published in @Nature! Analyzing over 1.6M snRNA-seq from 437 brains we uncovered cellular trajectories diverging aging and Alzheimer's disease defined by distinct cell communities. Huge thanks to @naomi_habib and all our collaborators.
https://t.co/51fAb5cXFz

[single cell network Israel (scIL) @singlecell_il]

Dear community, we hope you are safe these days🙏

Towards our meeting, don’t miss the chance to share your sc-ience, poster submission deadline is coming up, Aug. 29th⌛️.
👉  https://t.co/vKgKwpqDRU

Looking forward to seeing you Sept, 26th, 10AM @ELSCbrain, Givat Ram, JLM.

[single cell network Israel (scIL) @singlecell_il]

Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘
The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️
Registration: https://t.co/tZubDhRGJa

[Oliver Stegle @OliverStegle]

Excited about multi-omics in health? We have a fully-funded PhD position on AI for multi-omics analytics as part of HIDDS4Health call 2024. Apply here: https://t.co/QRuvw3lYhQ

[Nabieh Ayoub Lab @ayoubnlab]

Join the Ayoub Lab at the Technion!
We are seeking motivated Master's and PhD students.
Our lab focuses on unraveling the mysteries of DNA damage repair and developing innovative targeted cancer therapies.
To apply please contact: Prof. Nabieh Ayoub: [email protected]

[Weizmann Institute @WeizmannScience]

Researchers in Prof. @SItzkovitz lab at Weizmann and experts from @SHEBA_ Medical Center’s General Surgery Department compiled the first comprehensive gene expression atlas of the human small intestine >> https://t.co/X0B0xuS6Ew @Nature

[single cell network Israel (scIL) @singlecell_il]

Join us for the 1st Annual Single Cell Network Israel Meeting, Sep. 26 at @HebrewU focused on getting to know each other better! 💘
The core of the meeting will feature "Let’s talk sc-ience!" parallel sessions. 🗨️
Registration: https://t.co/tZubDhRGJa

[Mor Nitzan @mor_nitzan]

In a new paper, we show how deep nets training dynamics can be used to refine our understanding (or annotations) of single-cell/spatial data and reveal facets of multicellular organization & function.
Wonderful collaboration w @BarakRaveh, led by @JonathanKarin3 and Reshef Mintz.

[single cell network Israel (scIL) @singlecell_il]

Come work with us here in Israel

[Postdoc in Israel @PostdocIsrael]

Attention international postdocs:

Applications for the Azrieli International Postdoctoral Fellowship are now being accepted and are due by May 9!

The Azrieli International Postdoctoral Fellowship supports the best and brightest minds in their postdoctoral research in Israel, connecting them with world-class academics and leading researchers.

Please note that candidates are required to have an academic sponsor, who is a faculty member at an eligible Israeli academic institution.

@azrielifdn

[single cell network Israel (scIL) @singlecell_il]

Great Zman for some good news 🎉

[IdoAmitLab @IdoAmitLab]

We are very excited to present the development of Zman-seq (“Zman”, Hebrew for “time”), the 1st technology that measures single-cell transcriptomes and physical time in vivo, led by @D_Birschenkaum, @CuriousKX, @FlorianIngelfi1, @AssafWeiner
https://t.co/pDk6ackAtV. (1/19)

[Roy Granit @rgranit]

This week, I was excited to showcase @CompugenLtd 's advancements in #DataScience and #MachineLearning as a featured presentation in the Y-DATA School of Data Science 'Data-Driven Products' lecture series.

[single cell network Israel (scIL) @singlecell_il]

We all feel you! Don’t forget the error bars ..
#phd #reviewer2

[IdoAmitLab @IdoAmitLab]

We are starting a new lab tradition: a branded T shirt for the revision team to celebrate this exciting growth process.

[single cell network Israel (scIL) @singlecell_il]

Interested in the future of single-cell biology? 🔮 Check this inspiring perspective from leading researchers in the field, including
@IdoAmitLab and @SItzkovitz.
https://t.co/UNbLRbbp5H

[Sten Linnarsson @slinnarsson]

It was an amazing meeting: a beautiful venue with great food and cutting-edge science. I learned so much, and already look forward to the next meeting! Thanks @IdoAmitLab @jonykipnis !