Thomas Roder

Co-founder and CEO of Abrinca Genomics

Bioinformatician at Interfaculty Bioinformatics Unit, University of Bern

[SIB @ISBSIB]

Bioinformaticians of the world, it’s your time to shine! The SIB Bioinformatics Awards are now open to entries. They promote excellence, diversity & innovation in the field. Submit your best work & share with colleagues.
https://t.co/MnSSxdAfur

#SIBawards #ComputationalBiology

[Thomas Roder @__ThomasRoder__]

#Scoary2 is the first tool to enable the study of large phenotypic datasets (e.g., mass spectrometry) using mGWAS. This is made possible by its data exploration app which can be linked to e.g. #OpenGenomeBrowser, enabling fast, holistic and user-friendly data analysis!

[Thomas Roder @__ThomasRoder__]

🔬 Do you want to link bacterial phenotypes to genes? 🧬

We just published #Scoary2, an ultra-fast microbial genome-wide association studies (#mGWAS) software with a data exploration app!

#Bacteria #Genomics #Bioinformatics #OpenGenomeBrowser

[BMC @BioMedCentral]

An article published in @GenomeBiology presents Scoary2: an ultra-fast microbial genome-wide association studies software.
https://t.co/IrMnxpQ3aJ

[Abrinca Genomics @AbrincaGenomics]

🚀 Looking forward to where our journey with @venturekick will lead! #startup #venturekick #innovation #bioinformatics #opengenomebrowser

[SIB @ISBSIB]

Congratulations to our laureates and many thanks to our award committee and international juries.

You could be next!

Find out more about the awards and sign up to be notified when the next call for entries opens in 2024 here: https://t.co/HeFYvDyH6c #bc2basel #bioinformatics

[Thomas Roder @__ThomasRoder__]

I'm thrilled to announce that I've been honored with the Innovative Resource Award by SIB! 🏆🌟 Thanks to everyone who supported my journey.

[Elisabeth Bik @MicrobiomDigest]

@PetukhovViktor @NatureBiotech @KharchenkoLab @ISBSIB @mariabrbic Thirdly, the @ISBSIB Innovative Resource Award is handed out by Laurent Falquet.
It goes to Thomas Roder @__ThomasRoder__ for the development of the OpenGenomeBrowser.
#BC2Basel

[Geert van Geest @geertvangeest]

There are still some places left for our #reproducible #research course with #snakemake 🐍, #docker 🐋 and #singularity in beautiful #Davos 🏔️🇨🇭 in October!

[Thomas Roder @__ThomasRoder__]

On Monday, I finally defended my PhD thesis 👨‍🎓 with the title "Decoding Microbial Genomes: Novel User-Friendly Tools Applied to Fermented Foods"! I am beyond grateful for all the great people who supported me! 🙏

🧬🧫🦠 #PhD #grateful #OpenGenomeBrowser

[Geert van Geest @geertvangeest]

Tools like #quarto #GitHub and #zenodo don't only make your work #FAIR, they also increase your productivity + make your reports/websites look awesome 😎! Check out our tutorial @BC2Conference: https://t.co/KOuB4JSXtk. BTW: early bird registration ends next week!

[[BC]2 @BC2Conference]

@zkutalik @GfellerD @P_Palagi @marc_rr @gardeux_vincent @AiswwaryaPrasad @EPFL_en @CHUVLausanne @unil @UZH_en @Almut30618742 @IzaskunMallona @UZH_Science @AnthonySonrel @markrobinsonca @CSoneson @ensembl @mirloupa @emblebi @ISBSIB Learn to assemble and annotate genomes, and load them into #OpenGenomeBrowser in this #tutorial, for user-friendly comparative genomics!

Discover OpenGenomeBrowser, a self-hostable & open-source software. #genomeassembly #openscience

👉Register: https://t.co/20LusCvCoD

[Charlie Johnson @BioMath]

For best results, always start with high quality clean DNA 🧬

[Geert van Geest @geertvangeest]

Our group @unibern 🇨🇭🏔 ⛷ is expanding and we're looking for a #bioinformatician 🧬 and #sysadmin 🖥️ If you want to work in a great team on a wide range of scientific projects 🤓, check out these positions:
https://t.co/euX4NgmZDP
https://t.co/ZzCNwjEC9J
#jobsearch

[Geert van Geest @geertvangeest]

I plan to have a weekly highlight of a course on #Glittr. This week: 'Computational Genomics with R' from @AltunaAkalin. An insanely comprehensive book with everything you need if you're doing #genomics and #bioinformatics analysis with #rstats. Link: https://t.co/sBmkMx7UTP

[Thomas Roder @__ThomasRoder__]

@awesomegenomev1 Maybe I'm just slow, but this file: https://t.co/bfaC9YKaDo is not a c++ binary. It's (pretty ugly) PERL.

[Thomas Roder @__ThomasRoder__]

@awesomegenomev1 The source is in the bin folder. It's written in an ancient script, PERL! I think it's all there, though. The license is MIT: https://t.co/q6bTir3d43

[Thomas Roder @__ThomasRoder__]

@abrinca hey :)! I'm a PhD student and have recently founded a start-up, which is actually called Abrinca! Would you mind changing our username, so that we can use it for the start-up? We would be ever so grateful 😊!

[Blocksford Brickopore Technologies @brickopore]

Just updated our Events page with some pictures/tweets from brickopore users around the world. Great to see all this passion for science communication using Lego Mindstorms. @LEGO_Group

See https://t.co/ZpFo8IkO85

[Thomas Roder @__ThomasRoder__]

@LoreAment @Jente_O Try out the demo server here: https://t.co/KaRaPmsHD5
To learn how to host your own genomes, read the documentation and installation instructions here: https://t.co/B9ifdK99Sp
And of course, feel free to ask me any questions!

[Thomas Roder @__ThomasRoder__]

@LoreAment @Jente_O I'm the author of OpenGenomeBrowser. Actually, it can also be ℎ𝑜𝑠𝑡𝑒𝑑 on MacOS, I just do not provide support for it because I'm not a Mac user. It should not be that hard if you know docker. (Of course, it can be 𝑢𝑠𝑒𝑑 on any OS with a browser, even smartphones.)

[Thomas Roder @__ThomasRoder__]

@LoreAment Hey @LoreAment! I'm the author of OpenGenomeBrowser. Actually, it can also be ℎ𝑜𝑠𝑡𝑒𝑑 on MacOS, I just do not provide support for it because I'm not a Mac user. It should not be that hard if you know docker. (Of course, it can be 𝑢𝑠𝑒𝑑 on any OS with a browser.)