Wibowo Arindrarto

[Wibowo Arindrarto @_bow_]

@kaiblin @BioMickWatson The user guide: https://t.co/NT6bXr8xLF has it on page 25 (last sentence of the page). I believe I decided to call it `acc_avg` (average accuracy) to diferentiate it from `acc` (accession) as we use `acc` as a common abbreviation for accession in the module.

[Wibowo Arindrarto @_bow_]

@pjacock @JRJHealey @Biopython Aha :), let's do that. Do we have an estimates release date for 1.70? I could probably squeeze in some non-breaking tweaks.

[Wibowo Arindrarto @_bow_]

@pjacock @JRJHealey @Biopython Not in SearchIO, but in Python's docs itself: https://t.co/hi1ij7iaTI. Related: we should have a timeline for lifting it, I guess?

[Wibowo Arindrarto @_bow_]

@Oli4More No technical reason. I just haven't got around to implement one :).

[Wibowo Arindrarto @_bow_]

@kaiblin ... but I've been using it for developing a local service and it works great :). I'm trying it out for deploying the service now.

[Wibowo Arindrarto @_bow_]

@kaiblin Probably highlights that @docker is better suited for bg services ;)? Why not make a container that runs the website locally?

[Wibowo Arindrarto @_bow_]

@kaiblin Thanks! Looking at it now.

[Wibowo Arindrarto @_bow_]

@HeyCupcakeNL Wow thanks! I'll be there when you open today then, was looking for it :)

[Wibowo Arindrarto @_bow_]

@pjacock Oh yes! I haven't been on Twitter for some time now ~ I think I know what's wrong (technically). Will reply on the thread soon :)

[Wibowo Arindrarto @_bow_]

@pjacock Heading there :) ~ thanks for the heads up.

[Wibowo Arindrarto @_bow_]

@Biopython @cyberpunknut Seconded on the report. Will look at this soon :).

[Wibowo Arindrarto @_bow_]

@cjfields I get the impression that for user-facing software (e.g. for interactive dataviz), commercial is preferred by some. #ismb #wk02

[Wibowo Arindrarto @_bow_]

@compbiobryan @pjacock I'm biased for (bio)python of course :), but good to see if you can get an easier-to-install version working.

[Wibowo Arindrarto @_bow_]

@pjacock @compbiobryan No changes planned wrt to missing attributes. Some are planned for multiple hit IDs. Minimum in terms of API, though.

[Wibowo Arindrarto @_bow_]

@nthmost @Biopython Nice :). Our tests were plucked out of different sources ~ but. additions are always welcome of course.

[Wibowo Arindrarto @_bow_]

@nthmost @Biopython Does 'all' == abi from diff machines or 'all' == abi+fsa files? We have some test files that may be useful in Tests/Abi.

[Wibowo Arindrarto @_bow_]

@nthmost @Biopython That sounds neat :). Is the code/patch available somewhere we can see? [from the module author]

[Wibowo Arindrarto @_bow_]

@pjacock That looks nice :). How does it feel? Any feature you'd feel should be added / changed / improved?

[Wibowo Arindrarto @_bow_]

@pjacock Sure. Shall I update the page with examples and some short explanations as well? Should be done around the weekend :).

[Wibowo Arindrarto @_bow_]

@pathogenomenick @pjacock @lexnederbragt There is BLAT support (its PSL output) in Bio.SearchIO for parsing, indexing, and writing :).