Marvin Albert

Bioimage analysis and computing at Institut Pasteur.
Previously at EMBL Heidelberg and UZH Zurich.

[Marvin Albert @_malberto]

3D embryo averaging for movie fans!

#zebrafish #lightsheet #multiview #imageregistration #UZH #EMBL

#SwissScienceImage

Description: https://t.co/D0TFGO3I8B

[Julian Gargiulo @Nano_Juli]

Ayuda con la difusión!
Buscamos personas interesadas en hacer un doctorado CONICET en un proyecto interdisciplinario, desarollando microscopios ópticos para adquirir imágenes neuronales en animales vivos.
Más info del proyecto en el flyer y el hilo abajo...
@leloir

[Florian Jug @florianjug]

Tomorrow is the last day!!!

If you see this on Tuesday the 10th — TODAY!!! 🚨

If you see this after the 10th… you missed out… 😜

[Agustin Corbat @aacorbat]

I'm presenting a poster at @cziscience Imaging The Future on the Three Gears of BioScience Projects. I will discuss how #imaging, analysis and modelling synergize and are fueled by clearly defined questions, and also how far should support go. 10.6084/m9.figshare.27725865

[Virginie Uhlmann @VirginieUhlmann]

Bioimage analysts have a huge impact on modern biology research and can enable so much more when appropriately resourced. Read our piece and maybe also casually drop it on the desk of your PI/Head of Department/Dean/rich uncle!

[Robert Haase @haesleinhuepf]

Amazing, @StRigaud is demonstrating multi-GPU support🎉 using #pyclesperanto(without _prototype) for #BioImageAnalysis at #I2K2024(virtual)!🔬🖥️🚀
The notebook is available online #openaccess
https://t.co/fpUimUA204

[Virginie Uhlmann @VirginieUhlmann]

If you didn't yet have enough good reasons to share your bioimage data, Matthew (@BioimageA), Josh (@notjustmoore), Erin (@tuesdaystitches), Assaf (@AssafZaritsky) and I are here with squirrel drawings to convince you that you should do it:
https://t.co/CEAjC8qFwo

[Simon F. Nørrelykke @SimonFlyvbjerg]

OME-Zarr: "Even a talk on formats [can be] interesting"
@notjustmoore @PavelTomancak #I2K2024 #BioImageAnalysis

[Inês Cunha @inesmcunha]

Ahhh this felt amazing!! 🤩 Super happy to have given a selected talk at this AWESOME conference #I2K2024 ♥️♥️ Thanks to everyone for the amazing discussions!! ☺️

[Anna Klemm @ahklemm]

We @biif_sweden had great fun teaming up with Frederic Ballllosera Navarro from Emma Lundberg's lab for an #i2k workshop! We discussed tools and approaches for #multiplex image data, and showed #PIPEX #TissUUmaps #spatialdata!

[Joel Lüthi @joel_luethi]

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis.
If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)

[Jean-Yves Tinevez @jytinevez]

2.
Marie Anselmet could not join due to admin reasons, but @StRigaud kindly volunteered to put her poster>
In it we relate our WIP towards #TrackMate v8. This is a forthcoming new major version geared towards applications in microbiology.

[Jean-Yves Tinevez @jytinevez]

multiview-stitcher: A python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
https://t.co/GxU1wqfahA
https://t.co/2aoJvW2cQb
Poster 129 Session 2 on Thursday 24/10 at 2pm

[Jean-Yves Tinevez @jytinevez]

1. Marvin Albert @_malberto will present *multi-view stitcher*, a Python framework for registration, stitching and fusion of multi-tiles, multi-view images.

[Jean-Yves Tinevez @jytinevez]

@gaLLetort @MinSonPhan @DevStem_Pasteur 5. Stéphane Rigaud @StRigaud and @haesleinhuepf will animate a workshop on #clEsperanto.
CLE is a GPU-accelerated image processing library, that aims at offering lightning fast image processing with all GPU on all major OSes,

[Jean-Yves Tinevez @jytinevez]

@gaLLetort 4. Minh-Son Phan @MinSonPhan will present his recent work just published on the cell fate specification via lateral inhibition in Schweisguth’s lab of the
@DevStem_Pasteur
He spoke about it last week here:
https://t.co/4rQvnNVAHf
.

[Jean-Yves Tinevez @jytinevez]

@gaLLetort The 2nd tool on @gaLLetort's poster is #EPICURE, a #napari tool for accelerate and facilitate manual and automatic tracking cells in epithelial tissues:

[Jean-Yves Tinevez @jytinevez]

3. Gaëlle Letort @gaLLetort has a poster showcasing two tools for developmental biology.
The first one is #DeXtrusion, an AI tool built for the automated detection of rare events in time-lapse.
Published here

https://t.co/Ln2MGLOEZL
code here
https://t.co/q4kfZnj4gc

[Marvin Albert @_malberto]

@bio_physics Oh just saw this. BigTrace looks amazing indeed. There's also this super cool napari plugin: https://t.co/Zxoq5LekBS

[Joanna Pylvänäinen @JwPylvanainen]

Great opportunity to join Turku BioImaging (Finland) image data team as an image data analyst. Team is great, work is fun and as a plus I'm located in the same corridor 😅 Join our great imaging family in Turku!

[PPBI-Portuguese Platform of BioImaging @PPBioImaging]

🎉 Huge success at the "Intro to BioImage Analysis with Python for Life Scientists" course!
Thanks to @EuroBioImaging, @eRImote_EU, @jytinevez, @camachodejay, and @gabymartins for making it happen! Inspiring to see #BioImageAnalysis community thriving!
#AI4Life #PPBI #Python