Anastasia Samsonova

Computational Biologist at Oxford University, interested in Genomics, Epigenomics, Cancer Biology, Machine Learning, lncRNAs, #genomedefence and #transposons

[Anastasia Samsonova @a_a_samsonova]

SWaveform, a newly created open genome-wide resource for read depth signal in the vicinity of structural variant (SV) breakpoints. Check it out at
https://t.co/e1JuYJ86FV and https://t.co/kxEUKewKxl
#Genomics #Genetics

[PLOS Biology @PLOSBiology]

Heard @matthewcobb on @BBCr4today re transformative ideas of #FrancisCrick? Read his essay in #PLOSBiology: https://t.co/e8gHrhIjvm

[Nikolaus Rajewsky @N_Rajewsky]

found this on the wall of our lab:

[Human Genome Org @humangenomeorg]

HGM2018 Registration is Open!

Do not miss the early-bird chance:
https://t.co/JTPrfXDTOl

[Anastasia Samsonova @a_a_samsonova]

Have these trends changed since 2010? https://t.co/SQAe5r2wJ1 #royalsociety?

[Genome Medicine @GenomeMedicine]

A practical guide to #singlecell RNA-sequencing for biomedical research and clinical applications https://t.co/uW8Tj8KYs5

[Anastasia Samsonova @a_a_samsonova]

The growth of each cancer clone depended more on the CSC hierarchy of cell divisions than on genomic heterogeneity? https://t.co/YvdQQmseuk

[Anastasia Samsonova @a_a_samsonova]

fruit flies & machine learning - great combination https://t.co/XfLnMRkufE

[HHMI @hhmi_science]

JAABA, a #machinelearning program, tracks fruit fly movement and identifies behaviors, such as jumping. https://t.co/r8vfT2mGO9 @HHMIJanelia

[Nature Genetics @NatureGenet]

Online @nature Integrative clinical genomics of metastatic cancer https://t.co/yU8QDulsoV

[Anastasia Samsonova @a_a_samsonova]

Useful review on modern epigenomics https://t.co/5WDrjcV9qK

[Nature Reviews Genetics @NatureRevGenet]

Multi-dimensional epigenome profile integration https://t.co/vFemzm4mYS #figure #slide for talks: https://t.co/QmadPoTi32

[Matt Ritchie @mritchieau]

JL: Access cBioPortal data using the cgdsr #Rstats package https://t.co/Z4qsH9HU9J #bioc2017

[Anastasia Samsonova @a_a_samsonova]

I had fun explaining Venns to clinicians. Looking forward to deciphering UpsetRs @nils_gehlenborg @robertclab https://t.co/RT0Yab7YUY

[Robert Castelo @robertclab]

N. Gehlenborg. Upset plots w/ the UpsetR package. Better than multiway Venn diagrams #bioc2017

[Trends in Cancer @trendscancer]

Multiregional Tumor Trees Are Not Phylogenies https://t.co/nfm0WYiyGB

[Stephen Turner 🦋 @stephenturner.us @strnr]

New RNA-seq aligner gives BAMs, AND txp quants (edging out Salmon, Kallisto in DREAM), AND fusion detection https://t.co/E5pN2nmr09 hmm...

[David Kreil @dpkreil]

Protein coding gene expression gave stronger predictors than non-coding genes, methylation, or CNV in classifying cancers of unknown origin https://t.co/aZ38EM8z0e

[Nicolas Robine @notSoJunkDNA]

Defining a Cancer Dependency Map. @CellCellPress https://t.co/UZtVsnhGpH

[Nicolas Robine @notSoJunkDNA]

Enhancer Reprogramming Promotes Pancreatic Cancer Metastasis
https://t.co/nk8wWnr8IY

[Anastasia Samsonova @a_a_samsonova]

Sequence artefacts mar detection of somatic transposition in flies? #Transposon https://t.co/NgGLRvwNXo

[Enhancer/loops paper @loops_enhancers]

The cis-regulatory dynamics of embryonic development at single cell resolution
https://t.co/PLfTvcbiS5

[Anastasia Samsonova @a_a_samsonova]

Two papers on #Transposons https://t.co/OBj48i8ZHN

[Eric Topol @EricTopol]

Whether you call them "jumping genes" or mobile DNA, these are 2 new, excellent info sources
https://t.co/9GwIYS2cEi
https://t.co/L0PEdQWIGL