Maik Herbig

ML Engineer at Anvajo. Applied machine learning for biomedical research. PhD in Physics. Finds cells beautiful. Python enthusiast. Developer of AIDeveloper

[Isozaki Lab (磯崎研究室、立命館大学) @IsozakiLab]

Our image was selected as the back cover of @LabonaChip! It was created by Mika Hayashi, a first-author, UTokyo PhD student. Outstanding art!
https://t.co/aekqATXFVn

[Maik Herbig @AIDeveloper1]

@IsozakiLab @LabonaChip Mika got sooo good at that! I love that piece of art! I keep discovering details the longer I look at it :)

[Isozaki Lab (磯崎研究室、立命館大学) @IsozakiLab]

Our accepted manuscript was opened in @LabonaChip ! The title is "Is AI essential? Examining the need for deep learning in image-activated sorting of Saccharomyces cerevisiae."
https://t.co/l9Vm5005lA

[Maik Herbig @AIDeveloper1]

It doesn’t happen every day that you bump into Manu Prakash @PrakashLab. Thanks to the organizers for bringing all those excellent people together in Dresden! #EMBOlivingsys23 @PoLDresden

[Maik Herbig @AIDeveloper1]

@ISOZAKIAkihiro 🥳 Congratulations and good luck! The campus and surrounding area looks really beautiful 🏔️

[Maik Herbig @AIDeveloper1]

@Alexis_Lomakin https://t.co/xKnAH0yJQy

[Maik Herbig @AIDeveloper1]

@joachimgoedhart I used a script that rotates the image from -30 to 30 and checks each time for the sum in horizontal and vertical direction. Idea: when points align, there should be a peak. I you want I can message you the script.

[Maik Herbig @AIDeveloper1]

@dr_alphalyrae Pretty common in japan

[Florian Jug @florianjug]

We are looking for two talented „Bioimage Analysis and AI Research Software Scientists“ to join us @humantechnopole. Positions are funded via #AI4LIFE (HorizonEurope), and will help the life sciences to better utilize cutting-edge AI methods… 🧵
https://t.co/i3yzOqBZzN #AI #ML

[GODA LAB @ut_godalab]

In image activated cell sorting, it’s crucial to predict when cells arrive at the sorting point, especially when the latency is large. In our new paper we employ machine learning (XGBoost) and morphological features to predict sorting times more accurately
https://t.co/8aJv3hsAEu

[Maik Herbig @AIDeveloper1]

@palankarr @zellmechanik Yeah! The original ShapeOut1 is still doing its job :)

[Maik Herbig @AIDeveloper1]

@jnuneziglesias https://t.co/peWaq2KOWY

[Livia Puljak @liviapuljak]

Our new study shows that data availability statements are not very useful; 1670 (93%) authors who indicated that data are available on request either did not respond or declined to share their data with us. Journal of Clinical Epidemiology: https://t.co/4IT2Dgphl4

[Maik Herbig @AIDeveloper1]

It's so cool to meet scientists with similar vision here @ISAC_CYTO and then spontaneously do some sightseeing. Thanks @SchraivogelS for the nice chat!
(please note the "Liberty Bell" in the background)

[GODA LAB @ut_godalab]

We are enjoying the in-person conference CYTO2022 (@ISAC_CYTO) in Philadelphia and are looking forward to our talks! Our team has a total of 8 talks 🤓!

[Maik Herbig @AIDeveloper1]

By the way, if you need a copy, let me know!

[Maik Herbig @AIDeveloper1]

I proudly present a first-author paper of Jeffrey Harmon, a PhD student in my team.
Congratulations Jeff :)
👇

[GODA LAB @ut_godalab]

Microalgae are 50x more efficient in taking up CO2 compared to terrestrial plants, which can be linked to their ability to relocate mitochondria (mt). We present an imaging flow cytometer that uses AI to discriminate mt-positioning and sort target cells: https://t.co/GNBVZ1Acte

[Maik Herbig @AIDeveloper1]

If you want a copy, don't hesitate to DM me on twitter, or ask me on ResearchGate:
https://t.co/OZN4WonWO9

[Maik Herbig @AIDeveloper1]

While the term “throughput” is abundantly used, its definition in biomedical settings is not clear. I had the pleasure to discuss the issue with leading scientists in flow cytometry, high-throughput screening and sequencing. More info @naturemethods:
https://t.co/9EiLrFwKfy

[GODA LAB @ut_godalab]

We recently discussed “throughput” and found that flow cytometry, screening, and sequencing used different units. Here is a correspondence by @dinodicarlo @GuckLab @NaoNitta1978 @dritoshien @AIDeveloper1 @ISOZAKIAkihiro et al. how it can be standardized:
https://t.co/YQgAzi26Qu

[Maik Herbig @AIDeveloper1]

@WehnerLab WOW! I wonder if the result from the second attempt will become even more beautiful