Animesh Gupta

Quantitative biologist @generate_biomed | PhD @UCSanDiego | IITB | Phys, EvoBio | Interests- soccer, tango, economics, geopolitics and philos of science

[Joshua Weitz @joshuasweitz]

Proofs are here...

Asymptomatic: The Silent Spread of COVID-19 and the Future of Pandemics

Available for pre-order, to be released October 22, 2024 via @JHUPress.

https://t.co/OG2IBLnMV9

[Sergey Kryazhimskiy 🇺🇦 @skryazhi]

1/7 Terry Hwa and I are looking to hire a joint postdoc at @UCSanDiego. The "official" ad is below 👇 Please repost and spread the word among non-Twitter people.

[Justin Meyer @justinrmeyer]

I want to congratulate former student Hannah Strobel and our collaborators for this paper, our first directly studying the physical properties of our favorite protein, bacteriophage lambda's receptor-binding protein (J).

https://t.co/QItyxsIbLg

[Justin Meyer @justinrmeyer]

We're recruiting one or two postdocs to work on subjects at the intersection of basic research on phage-bacterial coevolution and phage therapy. Please email ([email protected]) if you're interested.

[Generate:Biomedicines @generate_biomed]

Today we release Chroma, our generative model for protein design, open-source on Github with a Nature publication describing its biophysical and crystallographic validation. Chroma Conditioners enable one model to target multiple protein design objectives. https://t.co/u5P0c9b2wT

[Justin Meyer @justinrmeyer]

Proud of @jm_borin for his recent paper from our lab in collab w/ @joshuasweitz. This work makes the findings from my most cited paper seem trivial. Really beautiful work! 1/7

https://t.co/gNq34PNAgy

[Josh Borin @jm_borin]

Chapter 3: You've heard of fecal microbiome transplants, but what about fecal VIROME transplants?

https://t.co/IcV0avAt7c

[Justin Meyer @justinrmeyer]

New paper out by @jm_borin and his mentees on selecting phages for phage therapy. Trained by coevolution, generalists, specialists mixed in a cocktail?
https://t.co/frqHoTUN4a

[Justin Meyer @justinrmeyer]

Recruiting postdocs to work at the intersection of phage therapy and evolutionary biology. Topics include coevolutionary phage training, phage-bacterial interaction networks (PBINs), and predicting PBINs from genome sequences. E-mail [email protected] with CVs or other inquiries.

[Animesh Gupta @anigupta12]

@r_sabareesh @gsk_swetha But in percentage of the total bill, I rem that used to be very low, mostly leaving change that people would get back. Have things changed in the past decade?

[Animesh Gupta @anigupta12]

A good step forward https://t.co/O2zL9ikBnk

[Animesh Gupta @anigupta12]

More coverage of our work - 'Front Matter' at PNAS : )

[Justin Meyer @justinrmeyer]

Thank you @MayBerenbaum @PNASNews for promoting our research, I just wish you had given our work a 2nd chance when it received mixed reviews at PNAS. Junior researchers, never let a flawed review process get you down! https://t.co/0ieed78y6s

[Animesh Gupta @anigupta12]

https://t.co/p0uJDwHpL7

[Animesh Gupta @anigupta12]

My main project from PhD is published! Many thanks to all the coauthors for their support and efforts in seeing this big, long project through to the end.
Below is a short summary by my advisor and link to the press release on our work for all curious minds. Check it out :)

[Justin Meyer @justinrmeyer]

New paper out that took >10 years to complete and included an incredible team @anigupta12 @LuisZaman Hannah Strobel @gallie_jenna @AlitaBurmeister @evokerr Einat Tamar @RoyKishony 1/3

https://t.co/KftXumwIsF @eLife

[Generate:Biomedicines @generate_biomed]

Breaking news: We've just been named to @Forbes AI 50 List, which recognizes standout companies making the most interesting and effective use of artificial technology. https://t.co/9ga2TnPXoe #ForbesAI50

[Animesh Gupta @anigupta12]

@justinrmeyer @joshuasweitz @cyleung2001 @jm_borin Here is the full-text link of the paper:
https://t.co/St6kruvSk0

[Animesh Gupta @anigupta12]

Very excited to share our new work on understanding mechanisms that drive host-parasite coevolution! Thanks to all the co-authors for all their work and inputs. Below is the full-text link and a great summary of the paper by @justinrmeyer https://t.co/St6kruvkus

[Justin Meyer @justinrmeyer]

New paper out in Ecology Letters with @anigupta12, @joshuasweitz, @cyleung2001, @jm_borin, and others that provides important lessons on coevolution, cryptic genetic variation, and mechanisms structuring microbial communities. 1/14 https://t.co/bo5r4T6KL1

[Will Ratcliff @wc_ratcliff]

Well, this has been a long-awaited day- the first paper on our multicellularity Long Term Evolution Experiment (LTEE) is on the BioRxiv. Ever wonder how simple multicellular organisms evolve to become larger and more complex over thousands of gens? 1/35

https://t.co/0TahpNRuD7

[EMBL @embl]

EMBL and @DeepMind have partnered – a breakthrough for science.

Together, we're providing a treasure trove of protein structure predictions powered by #AlphaFold to herald a new era for #AI-enabled biology.

https://t.co/QSM55eB2Fk

[Animesh Gupta @anigupta12]

My main PhD work is now up on bioRxiv! Check it out :)

https://t.co/9HGqIQRJt0

[Justin Meyer @justinrmeyer]

I’m thrilled to publish this preprint; it took a decade worth of work! Congratulations @anigupta12 for pushing the work over the finish line with help from @LuisZaman @evokerr @AlitaBurmeister @RoyKishony and others. 1/7 https://t.co/IH93CB203R