Adam Phillippy

Finished a human genome, working on a few more 👨‍💻 Posts are my own

[Adam Phillippy @aphillippy]

@acarroll_ATG @StevenSalzberg1 @pushmeet @GoogleDeepMind @GoogleResearch @kishwarshafin Indeed @kishwarshafin was a co-lead and critical member of the T2T polishing team. He used various Deep* methods as part of that work. Fully detailed in this companion paper: https://t.co/jhGXxNyoyl
cc @JG_Underwood

[Adam Phillippy @aphillippy]

@karynotype I’ve always been very popular with the moms. They can’t resist my boyish charm 😂😂 My mom’s “social media” also involves bringing news clippings to dinner ❤️

[Adam Phillippy @aphillippy]

@kberlin Giving Bluesky a shot

[Nature Methods @naturemethods]

Extra-long tandem repeats (ETRs) such as centromeres and immunoglobulin loci are difficult to align. UniAligner is a computational method for efficiently and accurately aligning ETRs, facilitating analysis of their variation and evolution. @AndreyBzikadze
https://t.co/pr7N0eCqmq

[Adam Phillippy @aphillippy]

@juhyunk_ Congrats Juhyun! 🎉

[Juhyun Kim @juhyunk_]

Thrilled to share my first paper on GWAS! 📚🧬We utilized imputed genotypes through a new Asian population panel we established, and integrated GWAS with snATAC data to uncover causal cell types! 🧬🧪 Published in Science Advances today! 🎉🥳🥳

https://t.co/BqEzjvn3MQ

[Colin McCarthy @US_Stormwatch]

New video from Front Street shows virtually all of downtown Lahaina has been burned down.

[EMBL-EBI @emblebi]

We’re looking for a new Head of Research.

Join us to lead, inspire, and shape the future of bioinformatics

Closing: 2 Oct 2023

[Dr. Krystal Tsosie, PhD, MPH @kstsosie]

I'm so proud of the @IndigiData initiative. Since starting two summers ago, this workshop has skyrocketed to create timely and much-needed informatics and Indigenous data science workshops on topic areas of direct impact to Tribal Nations. Ahéhée' to everyone who make it happen!

[Adam Phillippy @aphillippy]

@gerrythill Thanks for this, Gerry. You answered a lot of the remaining questions I had after reading the @StevenSalzberg1 lab preprint

[Adam Phillippy @aphillippy]

@StevenSalzberg1 @Nature @AbrahamGihawi @elapertea @YuchenGe1 @JenniferLu717 Great work y'all 👏 Thanks for putting in the time to expose these common analysis traps so that others might avoid them in the future

[Lee Katz @[email protected] @lskatz]

🚀 Unleash the need for speed with the sizzling hot Mashtree v1.4 update! ⚡️ Experience the thrill of faster performance as we bid adieu to the sqlite dependency and usher in a sleeker codebase. 📦Share your thoughts on GitHub issues. ✨💻 Update now: https://t.co/OEPycwiJdI 🌐

[UMIACS @umiacs]

Distinguished @UofMaryland Professor Rita Colwell made @Forbes' "50 over 50" list of women changing the world through innovation. A renowned microbiologist for her work to eradicate diseases, Colwell also founded a tech company that analyzes microbiomes.

https://t.co/3EfVV7Rv4Z

[Marcela Uliano-Silva @MahUliano]

NCBI Comparative Genome Viewer, NCBI Datasets, Nextflow, Smudgeplots, Treeval, VGP Galaxy Pipeline!
27 sessions already scheduled across time zones
FREE and OPEN-TO-ALL
Over 310 spaces already booked, so sign up ASAP at https://t.co/muaIQoMK7B

[Marcela Uliano-Silva @MahUliano]

This year BG23 has an Academy! Come learn how to use that software you tried alone but had many questions! Led by experts and developers on BlobToolKit, BUSCO, EarlGrey, EASEL, EBI Data Portals, ENA Submissions, Ensembl Annotation, Gfastar, GoaT, hifiasm, Merqury, MitoHiFi, +

[Steven Salzberg 💙💛 @StevenSalzberg1]

Major, fatal errors found in the data and methods of a 2020 paper in @Nature, including millions of reads mis-identified as bacteria. The "cancer microbiome" in this study was simply not there. @abrahamgihawi @elapertea @YuchenGe1 @JenniferLu717 https://t.co/z5Aja84kiR

[Adam Phillippy @aphillippy]

@hollybik Congrats Holly!! 🎉🎉

[Adam Phillippy @aphillippy]

@roneilllab @HartleyGabby 🎉 Congrats Gabby!! 🎉

[Eric Green @NHGRI_Director]

I would like to welcome Jen Troyer, Ph.D., in her new role as incoming Director of NHGRI’s Division of Extramural Operations. For years, Bettie Graham, Ph.D. – a legend @NIH and beyond! – has served in this position; she will be outgoing Director until she retires in late 2023.

[Adam Phillippy @aphillippy]

🧵 on new minimizer-space metagenome assembler metaMDBG 👇

[Gaetan Benoit @gaetan_benoit]

Very happy to present metaMDBG, a new assembler for long accurate metagenomics reads (e.g. PacBio HiFi)!