Bgee database

Database of gene expression @ISBSIB @unil
Find us here:
Bsky: @bgee.org
Mastodon: @[email protected]
LinkedIn:

[ELIXIR Europe @ELIXIREurope]

🙌 BioHackathon Europe 2024 was held in Barcelona, Spain 🇪🇸 with 180 in-person participants and over 140 online, hacking through 30 bioinformatics projects.
🎯 Accelerating scientific innovation in #bioinformatics! #BioHackEU24

Read the news 👇 https://t.co/uYSFqeboDg

[Bgee database @Bgeedb]

@cdessimoz @news4go @ISBSIB @Gloveface @DEE_UNIL @marc_rr @fred_bstn Right, phylogeny cartoon showing divergence of paralogs to outgroup, and graph showing higher expression similarity for slower evolving paralogs than for fast evolving ones.

[Bgee database @Bgeedb]

In this exciting new preprint, Warwick Vesztrocy et al use Bgee to show that "the most diverged orthologues display the greatest change in gene expression, thus suggesting that they have a greater functional divergence"
https://t.co/pHLCgWQJ8j

[Bgee database @Bgeedb]

@cdessimoz @news4go @ISBSIB @Gloveface @DEE_UNIL @marc_rr @fred_bstn Left, phylogeny cartoon showing divergence between paralogs (symmetric: same branch lengths, asymmetric: different branch lengths for paralogs), and boxplots showing higher expression similarity for symmetric than assymetric paralog pairs.

[Christophe Dessimoz @cdessimoz]

Thrilled to represent @ISBSIB at the AI-Bioscience Collaborative Summit in Washington DC, organized by @StateDept et al. Great to see a growing recognition of curated biodata’s critical role in AI breakthroughs, exemplified by resources like PDB & @uniprot enabling AlphaFold. 1/2

[Bgee database @Bgeedb]

@wikidata @EvoMRI @ISBSIB @jervenbolleman @marc_rr @fred_bstn

[Bgee database @Bgeedb]

Bgee is proud to contribute open gene expression data to Wikidata. Happy birthday @wikidata!
You can leverage this data directly through Wikidata, or find it under RNA expression pattern in the info box of every gene page in Wikipedia.
https://t.co/5V6YpgRlEj

[Bgee database @Bgeedb]

Coming to #biocuration2025? Join our workshop scFAIR: FAIRification of single-cell data https://t.co/D46ki1NKGB @ISBSIB @biocurator @marc_rr @fred_bstn #scRNAseq #FAIR #biocuration #bgee #FAIRdata #FAIRification #scFAIR #SingleCellAnalysis https://t.co/WIpWqBBgZ4

[Laura Luebbert, PhD @NeuroLuebbert]

gget bgee 🐝

What is my gene of interest called in other species? (In other words: give me all orthologs of my gene.)

@Bgeedb

[Bgee database @Bgeedb]

@lpachter @ISBSIB @marc_rr @fred_bstn #bgee #Bioinformatics #RNASequencing #SingleCellRNASeq #Genomics #Transcriptomics #GeneExpression #ComputationalBiology #SingleCellAnalysis #GeneExpressionAnalysis

[Bgee database @Bgeedb]

Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. #RNAseq #biocuration #Python #scRNAseq https://t.co/FcGUR94w4I @lpachter @ISBSIB @marc_rr

[Bgee database @Bgeedb]

Bgee has a new look! We have officially switched to the new Bgee website. Check us out at https://t.co/YIp1kwGiG1 @ISBSIB

[Bgee database @Bgeedb]

We also added the free text anatomical, developmental and cell type information provided by authors in addition to the standardized ontology terms. @ISBSIB

[Bgee database @Bgeedb]

This release includes the addition of a large number of bulk RNA-Seq libraries in Salmo salar (Atlantic salmon). We also now provide "physiological status", which holds information about the smoltification status of individuals which is especially relevant for Salmo salar.

[Bgee database @Bgeedb]

We are proud to announce the release of Bgee 15.2 with the addition of thousands of single-cell 10X Genomics and bulk RNA-Seq libraries to allow for more meaningful gene expression comparisons across species. https://t.co/YIp1kwGiG1

[Bgee database @Bgeedb]

We still have some seats available for the #SIB course on Gene expression made useful easily: tools and database of Bgee live-streamed on 31 May 2024
https://t.co/Y1tr245DiR
#biocuration #bioinformatics #RNAseq #SingleCell #GeneExpression #training
https://t.co/jF8l9P6XMB

[Bgee database @Bgeedb]

We are excited to announce a new training course on Bgee 🧬
Course: Gene Expression made Useful Easily: Tools and Database of Bgee
Date: Friday 31 May 2024
Taught by: the Bgee team (Frédéric Bastian and Marc Robinson-Rechavi)
Apply at: https://t.co/lCb8vGAxyM

[SIBTraining @SIBTraining]

📢 Gene expression made useful easily: tools and database of @Bgeedb
👉 Friday 31 May 2024
📍Streamed
Taught by @Bgeedb team (@fred_bstn & @marc_rr)
#bioinformatics #training @isbsib #RNAseq #singlecell #GeneExpression
🚨 Apply at: https://t.co/w8XTeaMAM7

[Bgee database @Bgeedb]

The @MonarchInit in 2024: an analytic platform integrating phenotypes, genes and diseases across species https://t.co/xkUmZIkWIs with Bgee inside, as well as our homology annotations through @uberanat