Florian Halbritter

Developmental Cancer Genomics. We study cancer and developmental biology using genomics and computing. PI @StAnna_CCRI | postdoc @CeMM_News | PhD @crm_edinburgh

[Florian Halbritter @cancerbits]

Our latest paper on modeling the effects of #neuroblastoma mutations on #development using #stemcells is finally out in @NatureComms! Amazing collaboration with @a_tsakiridis! More info to follow, read the paper here: https://t.co/GboQTH5tIY

[Cris Mayor-Ruiz @CrisMayorRuiz]

Congrats to @ines_4412, PhD in our team, on her first first-author paper! 😉 #KRAS #TPD #PROTACs #LUAD #IRBBarcelona
A great collaboration with the Santamaría (@ciccancer) and Riera labs (@URSAchemlab, #IRB), among many other friends and colleagues!

[St. Anna Children's Cancer Research Institute CCRI @StAnna_CCRI]

🔬 At this year’s Long Night of Research, around 850 visitors joined us to experience the future of childhood cancer research. Through direct engagement, guests gained insight into how scientific ideas evolve into meaningful approaches for young patients!

[Florian Halbritter @cancerbits]

Check out this work from Davide's lab!

[St. Anna Children's Cancer Research Institute CCRI @StAnna_CCRI]

🚨New paper! St. AnnaCCRI Researchers together with @CeMM_News uncovered a new strategy against leukemia: by collapsing the SAGA scaffold, the cancer-driving protein KAT2A breaks down, potentially halting leukemia cell growth. Published in @NatureComms👉https://t.co/lkc3L8TVn6

[William J. Greenleaf @WJGreenleaf]

Our Human Multiomic Development Atlas paper is out in Nature today! A heart-felt "thank you" to all co-authors for their tireless work on this complex yet exciting project! Congrats all! https://t.co/iUiZz00KOt

[Miki Ebisuya @EbisuyaMiki]

New preprint from the lab!

How do tissue shapes influence cell fate decisions?

By manipulating brain organoid geometry, we show that lumen rounding directs apical progenitor division mode and promotes the emergence of basal progenitors.

https://t.co/nyPU8kJNpj

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[Martin Pera @martinperaJAX]

Functional chromatin signatures premark future lineage-specific enhanc... https://t.co/9q5WaA7Cew

[CeMM @CeMM_News]

🔍 Search a tissue image like a dataset?

CeMM PI André Rendeiro & team have developed #LazySlide, an AI-powered, open-source tool that links whole-slide pathology images to molecular data & enables natural-language search.

➡️ https://t.co/oORtsTzSnv
📄 https://t.co/A0SS7KN9d6

[antisense. @razoralign]

Integration of large, complex single-cell datasets with Harmony2 https://t.co/UUxV0n8bZ5

[Stefan Barakat @StefanBarakat]

👋We are hiring a computational PhD student, interested in functional genomics and the non-coding genome. To continue developing our BRAIN-MAGNET algorithm recently published in Cell (https://t.co/r8uoZMZPfz). See vacancy for details!

https://t.co/QWoXjWHeNF

[antisense. @razoralign]

CellDEEP: Cell DiffErential Expression by Pooling highlights issues in differential gene expression in scRNA-seq https://t.co/oPGhMVHxk0

[Davide Seruggia @DSeruggia]

Excited to share another recent paper from the lab, in collaboration with @lucapinello and @danielevanbauer. We leveraged allele distributions after dense editing to identify the regulatory potential of individual nucleotides within #enhancers:

https://t.co/aTKlNX7P6U

[Alejo Rodriguez-Fraticelli @AlejoFraticelli]

INTERESTED IN SINGLE-CELL LINEAGE TRACING?

New review @NatureRevGenet from the @FraticelliLab. 🎉🎉

https://t.co/v3oa8gUUNj

With @VictoriaParreno we tried to update the modern manual for genetic tracing and clonal analysis. ENJOY!

Read link: https://t.co/amrOWuQvVs

[Davide Seruggia @DSeruggia]

Happy to share our paper in collaboration with the Halbritter group (@cancerbits). We used machine learning & ATAC-seq to refine erythroid differentiation protocols. Recipes for lineage differentiation are written on chromatin!
👉 https://t.co/s6MAJh9pZY
@StAnna_CCRI @CeMM_News

[Florian Halbritter @cancerbits]

Our new paper is out! Read all about it in the post below:

[St. Anna Children's Cancer Research Institute CCRI @StAnna_CCRI]

📢 New paper alert!
A research team led by @cancerbits and @DSeruggia developed a new method that helps scientists craft more accurate cellular models from stem cells. More: https://t.co/ZnOn7NN9ki

[St. Anna Children's Cancer Research Institute CCRI @StAnna_CCRI]

📢 New paper alert!
A research team led by @cancerbits and @DSeruggia developed a new method that helps scientists craft more accurate cellular models from stem cells. More: https://t.co/ZnOn7NN9ki

[Cancer Discovery @CD_AACR]

In Focus: Raising Awareness of Tremendous Progress and Ongoing Challenges in the Fight against Childhood
and Adolescent Cancers https://t.co/SZpjHoGnrL
By Samara L. Potter and Elaine R. Mardis at @nationwidekids @OhioStateMed

[St. Anna Children's Cancer Research Institute CCRI @StAnna_CCRI]

🎗️#InternationalChildhoodCancerDay! Every year, around 400,000 children worldwide are diagnosed with cancer. Progress is possible: through research, international collaboration and close cooperation between science and clinical care. Read more: https://t.co/LinJLC7CVH

[Thomas Krausgruber @TKrausgruber]

Deadline approaching!
3 more days to apply to our consortium!

I am looking for a PhD student interested in combining experimental systems biology and high-throughput assay to investigate memory formation in epithelial cells across organs.
Details here: https://t.co/ZFcaIVegBz

[Stephen Turner 🦋 @stephenturner.us @strnr]

DEPower: approximate power analysis with DESeq2 https://t.co/iV7RLrRvFe 🧬💻🧪