UCSC Cell Browser

Interactive Single Cell Data Explorer and Data Repository

Learn more:

[UCSC Cell Browser @cellbrowser]

With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime.

You can easily submit datasets here: https://t.co/FT8Pol3JKE

We’re not a substitute for GEO, but an alternative tool for hosting and visualizing

[UCSC Cell Browser @cellbrowser]

With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime.

You can easily submit datasets here: https://t.co/FT8Pol3JKE

We’re not a substitute for GEO, but an alternative tool for hosting and visualizing

[UCSC Cell Browser @cellbrowser]

🧠We've just add the Human Neural Organoid Cell Atlas to the UCSC Cell Browser!

Come explore it here: https://t.co/1BbInVqnvR

Big congratulations to ZhiSong He et al. and the whole team on this massive atlas!!!!👏
#singlecell #brainorganoids #developingbrain #neuraldisease

[ZhiSong He 何志嵩 @zhisong_he]

So honor and excited as a part of the great team with @josch_f @SophieMJ_Jansen leaded by @TreutleinLab @GrayCampLab. In our @Nature study, we generated a #singlecell atlas of early #brainorganoid development, and studied regulations of cell fate decision https://t.co/aP5mCgXWvS

[UCSC Cell Browser @cellbrowser]

Congrats to Dr. Alison Cole @Alison20132006 for her recent publication in Frontiers in Zoology! Come explore the updated Nematostella V2 Atlas. 👇

https://t.co/y4zkbF7Svs

[Ulrich Technau @UlrichTechnau]

Check out our updated single cell atlas of Nematostella, by @AlisonCole: https://t.co/sfoQPJldbW
It was completely remapped on the new chromosome scale genome and gene annotation (PMID: 38092765), but also contains new data and analyses. Great work, Alison!

[Aparna Bhaduri @BhaduriLab]

@prnano9 @AllenInstitute @DanielaJDiBella @LodatoS_Lab @ArlottaLab This is just one example of how our meta-atlas can generate testable hypotheses. Check out/download our data from the UCSC Cell Browser (https://t.co/eHmYWDqmmF). (13/16)

[maximilianh @maximilianh]

I’m at @czisinglecell2023 if you’re interested in @cellbrowser let me know

[UCSC Cell Browser @cellbrowser]

🐁 Another amazing mouse dataset to check out! Come learn about rare newborn cells in mouse brains:
https://t.co/0RMfwTZSF8

Many thanks to our submitter Ziyu Lu! @ziyu__lu

#singlenucleus #snRNAseq #progenitorcells #mouse #oligodendrogenesis #neurogenesis #TrackerSci

[UCSC Cell Browser @cellbrowser]

New rat dataset! 🐀 Come explore the rat liver atlas on the UCSC Cell Browser.
https://t.co/zPXPZqvm2E

Special thanks to our submitter Delaram Pouyabahar! @DelaramPB

#rat #singlecell #liver #atlas #transcriptomics

[UCSC Cell Browser @cellbrowser]

Big congratulations to Yonatan and team at UCSF on releasing their new paper in Science! 👏

You can explore this prenatal and postnatal human cortical development dataset on the UCSC Cell Browser:
https://t.co/y6CQ8yhoyY

#SingleCell #humanbrain #corticaldevelopment

[Yonatan Perez @Yonatan_Peretz]

Check out our new paper, just released: Single-cell analysis of prenatal and postnatal human cortical development | Science https://t.co/K4lwMcccCz

[bioinformagic1an @anunicorn1um]

Our single cell atlas from trigeminal ganglion cells was released on @cellbrowser ! Check out

🖥️
https://t.co/s76hm1npqU

[UCSC Cell Browser @cellbrowser]

🐁New mouse dataset! Come view a single cell atlas of mice trigeminal ganglion cells:
https://t.co/4mfAHtMzdY

Many thanks to our submitter Cristal Villalba @anunicorn1um!

#SingleCellResearch #TrigeminalGanglion #CraniofacialPain #MiceResearch

[UCSC Cell Browser @cellbrowser]

New dataset added! 🧠Come explore this new Alzheimer's Disease and aging brain atlas across 400 human brains from the ROSMAP project. Many thanks to our submitter Carles Boix and PIs @manoliskellis @DrLiHueiTsai
https://t.co/jilxkum0Ce #agingbrain #alzheimersdisease

[UCSC Cell Browser @cellbrowser]

We love seeing this number grow year after year 🌎🌍🌏 #Diversity #community #HCA2023GM #singlecell #humancellatlas

[UCSC Cell Browser @cellbrowser]

Looking forward to the next 3 days of meetings! #singlecell #HCA2023GM #humancellatlas

[Human Cell Atlas @humancellatlas]

We’re really looking forward to #HCA2023GM starting tomorrow!
To join us virtually, be sure to register at https://t.co/70hpQNBBAQ.

[GonçaloCasteloBranco @GoCasteloBranco]

To spatially dive into the datasets, check out the webbrowsers at:
https://t.co/gdTlAT4MNr
or
https://t.co/ZLfMEXpFkC

[Dr. Alison G. Cole @Alison20132006]

We propose the ectodermal muscle may be a novel anthozoan muscle cell type. The single cell data is housed on the UCSC @cellbrowser! Thanks to @UlrichTechnau and all co-authors for making this possible. 4/4

[UCSC Cell Browser @cellbrowser]

Newly published dataset! Come view snRNA-seq data of brain samples from DAP12-deficient Nasu-Hakola diseased individuals here: https://t.co/4FimMknZEq

Submitted by @YingyueZhou at @TheColonnaLab

[UCSC Cell Browser @cellbrowser]

New dataset added! Come view glia diversity in the human hippocampus. https://t.co/mSfye4CTl8
Submitted by @YijingSu2022 @zhoujoeyyi @Upenn_SongMing
#snRNAseq #singlenucleus #transcriptomics

[Lucas Schirmer @schirmerlab]

Thrilled to share our work on spatial cell type mapping of MS lesions spearheaded by @Cels121 and ⁦@PauBadiaM⁩ | paired single-cell & spatial transcriptomics | Thanks ⁦@saezlab⁩⁩, Simon Hametner, ⁦@DenisSchapiro⁩ ⁦@cellbrowser⁩ https://t.co/w5Jcddsviy

[UCSC Cell Browser @cellbrowser]

Sawasdee 🙏! The UCSC Team is here at the #HCA2022Asia meeting in Bangkok! Come check out our posters tomorrow Nov 4th at posters #25 and #26. #SingleCell #visualization @humancellatlas