Chunlei Wu

Professor @scrippsresearch - Bioinformatics, Data science, Crowd-sourcing, Genomics - Building @biogps @mygeneinfo @myvariantinfo @biothingsapi

[The NDEx Project @NDExProject]

We’re excited to be officially included in the #NIAID Data Ecosystem Discovery Portal, a hub for accessing #FAIRData from over 50 sources related to infectious and immune-mediated diseases. https://t.co/PSnvoO9QwE

[Jason "boundless delight " Williams @JasonWilliamsNY]

Ready to get started with #BOSC AT #ISMB2024 !

[Scripps Research @scrippsresearch]

Scripps Research scientists @flaneuseks @andrewsu @chunleiwu have partnered with @NIAIDBioIT to launch the NIAID Data Ecosystem Discovery Portal - a searchable interface of infectious & immune-mediated datasets

[Chunlei Wu @chunleiwu]

Do you have a #UI for non-computational researchers? Q3 from the audiences:
It's still a tool for bioinformatician at its current stage, but web #UI is on our Todo list. Altly, Biomedical Translator project is building a dedicated UI for querying knowledge #API, including ours.

[Chunlei Wu @chunleiwu]

Jackson from @biothingapi team presenting BioThings Explorer, https://t.co/nxIDq7jqHg, as a way to integrate distributed knowledge #APIs with lower developer burden #BOSC2023 #ISMBECCB2023

[Chunlei Wu @chunleiwu]

How scalable it is? Q2 from the audience:
BioThings Explorer does not hold any data locally, only keeps #MetaKG, semantic annotations of #API, in the memory, so scalability is one of its highlighted features.

[BOSC @OBF_BOSC]

Another great talk at #BOSC2023!

[GigaScience @GigaScience]

J Harry Caulfield now talking about transforming unstructured biomedical texts with LLMs. Using these to translate this unstructured data ti knowledge schemas. #BOSC2023 #ISMBECCB2023

[Chunlei Wu @chunleiwu]

@biothingsapi toolsets for building & integrating biomedical knowledge #API at #bosc2023 #ISMBECCB2023. Visit our posters today and/or join two talks on BioThings SDK and BioThings Explorer (by Jackson Callaghan) tomorrow, day-2 of #bosc2023

[Chunlei Wu @chunleiwu]

@puniyal_7: @OpenTargets #opendata provided in #cc0, with access via GraphQL, Big Query etc. @OBF_BOSC #bosc2023 #ISMBECCB2023

[Deepak Unni @deepakunni3]

The first keynote for #BOSC2023 by Dr. Sara El-Gebali (@yalahowy) titled “A New Odyssey: Pioneering the future of scientific progress through open collaboration”

[Nature Methods @naturemethods]

https://t.co/BnSLK4hXp2 Research Library collects and integrates COVID-19 information from various repositories, enabling 1-stop search for publications, clinical trials, datasets and other sources. https://t.co/FziPTgtzx0
@GTsueng @flaneuseks @K_G_Andersen @andrewsu @chunleiwu

[BioThings API @biothingsapi]

Now you can easily find sets of genes involved in #GeneOntology processes, diseases and more with our new @mygenesetinfo API. Try it out at https://t.co/SG9qxt3VsM

[Chunlei Wu @chunleiwu]

Our latest #Biomedical #API member of the @biothingsapi family! Public annotated genesets➕ user submitted genesets➕anonymous genesets

[mygenesetinfo @mygenesetinfo]

Soft launch of our brand-new https://t.co/Wi6ASuiddv, a web toolset for sharing functional gene sets in all species with programmatic #API access. A joint work of @vincerubinetti @ravila_4 & the @biothingsapi team of @GreeneScientist & @chunleiwu labs!

[BioThings API @biothingsapi]

New BioThings SDK #pypi package released with support for #python 3.9, 3.10 and a lot of other improvements! https://t.co/fImX7YUArc

[NIH Office of Data Science Strategy @NIHDataScience]

NIH launched the Long COVID Computational Challenge (L3C) which will award up to $500k in support of data-driven AI/ML solutions that help us understand the risks of developing the condition.

#NIHData #DataScience

https://t.co/2HVA04Il7e

[DiseaseOutbreak @DiseaseOutbreak]

We collaborated with @gisaid to enable access to all genomic data on https://t.co/c6AtWST0HM via R package https://t.co/GOPQVDsXbg

This allows researchers to access #SARSCoV2 variant data from https://t.co/c6AtWST0HM to support their own analyses. #openscience

[Scripps Research Academic Planning @ScrippsFaculty]

Congrats @ScrippsGradPrgm @ScrippsResearch for being, once again, ranked among the top ten in the nation, according to the U.S. News & World Report’s survey. We are the only non-university-based program included on the list. Another great reason to join our faculty!

[NIH Office of Data Science Strategy @NIHDataScience]

Just announced! @NIHdatascience is making it easier for researchers to share and reuse NIH-funded research data. Learn about our new initiative: https://t.co/ppezZScDib
#NIHdata #researchers #FAIRData #OpenData #OpenScience