Temple Coline

[Sebastien Massart @Be_Phytopath]

Celebration this week for the brillant PhD viva voce of Dr. @NuriaFontde 🎉📖

Great homecoming of @ColineTemple and @johan_rollin to enjoy this moment

Another PhD for the @inextvir project

[Sebastien Massart @Be_Phytopath]

New publication with @johan_rollin :

Cont-ID: #bioinformatics tool to check for cross-contamination between samples when using HTS technologies to detect viruses

https://t.co/1jccGMHzoN

Improving the reliability of diagnostics thanks to @inextvir & GHU of @CGIAR Genebanks

[Temple Coline @ColineTemple]

Thanks to all the producers that were met and all the co-authors: Arnaud Blouin, @SJTindale , Stephan Steyer, Kevin Marechal, @Be_Phytopath

[Temple Coline @ColineTemple]

Very proud to share a big part of my PhD! A study combining HTS for plant virus detection and growers' perception to have a holistic overview of the risks associated with viruses in Belgium.
https://t.co/Ch6wSU580q

[Temple Coline @ColineTemple]

@ Focus on tomato grown in sustainable diversified production systems in Belgium

[Núria Fontdevila Pareta @NuriaFontde]

Very excited to finally share my first first-author paper!🎉It was such a big work that it wouldn't have been possible without the help of all the co-authors, the funding agencies, and, especially, @Be_Phytopath . https://t.co/FM4O3lP92W

[Francois Maclot @FrancoisMaclot]

Very glad to see the big piece of my PhD published today in @JournalSpectrum about virus ecology and diversity in Belgian agro-ecosystems, and the discovery of 37 novel viruses in wild and cultivated grasses. https://t.co/sYMUaTvjeZ @Be_Phytopath
@UniversiteLiege
@frsFNRS

[Sebastien Massart @Be_Phytopath]

Our collaborative work on PhCMoV, managed by @ColineTemple, is highlighted by @plantdisease :

https://t.co/1IOV0EWau6

Thanks again to the colleagues for the great exchanges (that are ongoing now for another publication)

[Plant Disease @PlantDiseaseJ]

Editor’s Pick! Across 8 labs in 5 countries, @ColineTemple et al. collaborated on an in-depth characterization of Physostegia chlorotic mottle virus.
🔓https://t.co/weon4J2p14
@KrisDeJonghe2 @HeikoZiebell @YahyaZAGaafar @yan_xiaohua @DenisKutnjak @AnaVucurovic @Be_Phytopath

[Sebastien Massart @Be_Phytopath]

Wanna use reliably #HTS technologies in your lab for plant pathogens and pests detection ?

All you have ever wanted to know is in our new guidelines:
https://t.co/cbpXZxdGiR

->58 co-authors
->For any pest, technology & matrix
->For researchers and diagnosticians

[Sebastien Massart @Be_Phytopath]

Monitoring cross-contamination by an Alien Control when applying high throughput sequencing for #virus detection. Our paper is out:
https://t.co/63X3bZQUTk

#Diagnostic #HTS #NGS #PlantHealth #validation

@johan_rollin
@phytofrontiers @plantdisease @BiovIntCIAT_eng @inextvir

[Temple Coline @ColineTemple]

@ViromeHunter yes, mostly at the edge of the shelters but this is not a strict rule, it can also be in the middle sometimes.

[Temple Coline @ColineTemple]

PhCMoV in the field... still and always
(20 symptomatic plants / 250)
How did it go unnoticed all these years ?? 🤔

[Sebastien Massart @Be_Phytopath]

Published today: Guidelines for using HTS technologies in plant pest diagnostic (part 1):
https://t.co/hKj02icuHN (open access soon)

All you need to know to start using HTS

With >50 scientist from 40 countries & 35 labs

From @ValitestProject
#sequencing #planthealth

[Paul Rivarez @ViromeHunter]

🎉PRESENTING🎉 126 VIRUSES, INCLUDING 80 NEW SPECIES, FROM OUR STUDY:

"In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem"

Live now @biorxivpreprint:
https://t.co/DB1sADdkA0

Here's a short🧵on our findings:

[Plant Health Institute Montpellier @PHIM_research]

[#phimscience] ALL ABOUT #VANA & #Metagenomics @PhytopathologyJ @PHIM_research @UPvbmt @Cirad @UniofOxford @UniversiteLiege @AgroBioTech #ITRA @INRAE_UMR_DGIMI #UMR_BFP @INRAE_France @enzazaden @agroscope @bcfam_asu @ASU @UCT_news @UCTIDM @Varsani_lab @Be_Phytopath @MOgliastro

[Macha Nikolski @MachaNikolski]

Our new VirHunter #DeepLearning method is in press. It helps to detect #viruses in #HTS samples. Kudos to brilliant #PhD students @gregoruar @MaryamKhalili62 and all the @inextvir team #bioinformatics #research @univbordeaux @CNRSAquitaine @DepartementSBM
https://t.co/RFytNNA7Ss

[Temple Coline @ColineTemple]

@nicobejerman Sure! How can I reach you for that?
The MS should be in open access soon but in the meantime I can send it to you

[Temple Coline @ColineTemple]

Very excited to share my first first-author paper!
And I was not alone... 🤝🎉🤝🎉
Thanks to all the co-authors for this very nice international collaboration!

@Be_Phytopath @KrisDeJonghe2 @HeikoZiebell @ViromeHunter @DenisKutnjak & all

https://t.co/fzTXllmIhx

[Paul Rivarez @ViromeHunter]

It wouldn't be an exciting holiday without @ViromeHunter casually looking for viruses!