Very happy that our paper "CliquePH: Higher-Order Information for Graph Neural Networks through Persistent Homology on Clique Graphs" has been accepted at @LogConference ! a huge thanks to my co-authors @csfarzin@Pseudomanifold
1/n: 🔬We introduce NicheCompass (NC) a graph learning model to build spatial atlases across millions of cells, quantitatively characterize cell niches, infer cellular communication, and map new data into these atlases. NC can be used with various spatial technologies, ranging from cellular to subcellular resolution including even multimodal approaches. We have explored interesting biology by analyzing cell niches spanning from development to cancer. Led by @SebastianBirk_ in a fun colab with @cartalop:
paper: https://t.co/cryBX0vT8Z
Delighted to finally announce that Lotfollahi Lab starts this year at @sangerinstitute and @CC4AIM in Cambridge University. The lab will develop core AI/ml systems and also generate large scale multi-modal cellular data to advance cell engineering:
https://t.co/qFh5Wl7hGE
Which epitope mutations escape the T cell Response?
“Predicting T cell Epitope-specific Activation against Mutant versions” (P-TEAM)
https://t.co/ud4PgYSKp5
ML meets Wet-lab! Big THANKS for the collab with @edorigatti, Adrian Straub, Dirk BuschLab, @kischober @schubert_benni
Eager to develop computational tools and infrastructure for single-cell immune profiling data? Want to help shape the new #TRR355 between Munich and Mainz?
🚨Then join us as Bioinformatics PostDoc🚨 @HelmholtzMunich, @CompHealthMuc
https://t.co/HvOZ08g0xW
If you're a professor or a student in STEM in a Western country, you probably know someone from the Sharif University of Technology in Iran. They might have be your students, peers, or friends.
That university is now under attack by the Islamic Republic.
🧵(1/16)
#MahsaAmini
What a remarkable image. The daughter of Minoo Majidi--a mother of two who was killed by the Iranian regime while protesting for #MahsaAmini--stands at her mother's gravesite. She is defiantly unveiled, and in her left hand she holds the hair she cut from her head.
Hey World! This is the kind of news we Iranians wake up to every day. Another brave beautiful young woman is dead.
Hey World! Where the fuck are you?
Her name was #Hadis_Najafi
More women and men will get killed while you are silent. Be their voice.
#MahsaAmini#OpIran
Protests largely initiated by women in Iran have led to widespread antigovernment demonstrations and extraordinary scenes of dissent. Here's what to know. https://t.co/wajuO8eVLE