Marks Lab

Debbie Marks' Lab at HMS

[Marks Lab @DeboraMarksLab]

deboramarks: Will predicting viral evolution be a good thing?

[Marks Lab @DeboraMarksLab]

deboramarks: Should disease research focus on earlier diagnosis rather than drug discovery?

[Marks Lab @DeboraMarksLab]

deboramarks: Can AI help predict pancreatic cancer earlier? https://t.co/QwDLh6Oy8p and https://t.co/axIIlbp5kn

[Marks Lab @DeboraMarksLab]

deboramarks: RT @sara_mostafavi: MLCB 2023, coming back in November 29-30 as a hybrid conference (Seattle !). Check out the fantastic list of invited speakers @elhamazizi @bidumit @alexrives : https://t.co/5U9WCtCJnx
with great co-organizers @suinleelab @QuonBio @anshulkundaj…

[Marks Lab @DeboraMarksLab]

deboramarks: Applicable to other viruses- disease X- to anticipate immune escape - no antibody data needed https://t.co/ZbLF8OnNNf

[Nikki Thadani @NthadaniN]

We’ve updated our EVEscape paper with more SARS2 retrospective evaluation and potential use-cases! https://t.co/75UPtmQm7E Collaborators @sarahgurev @NotinPascal @nooryoussef03 @_nathanrollins @sandercbio @yaringal (@OATML_Oxford), @deboramarks, 🧵1/4

[Marks Lab @DeboraMarksLab]

deboramarks: RT @AlanNawzadAmin: The preprint of my work with Eli Weinstein and Debbie Marks is up! In it we show that your off-the-shelf kernel for biological sequences is probably not as flexible you thought and build alternative sequence kernels that … https://t.co/aX0QPkuXcV

[Marks Lab @DeboraMarksLab]

deboramarks: Check out this job at Harvard Medical School: Project Manager, Predictive Modeling https://t.co/hHoZ0K5pG4

[Marks Lab @DeboraMarksLab]

deboramarks: RT @ml4proteins: Next week on 4/11 @ 4 pm EST, we'll have @NotinPascal talk about hybrid protein language models for fitness prediction!

https://t.co/vgJCMU1f4v

[Marks Lab @DeboraMarksLab]

deboramarks: Interested in making AI work for Bio and sustainability? Join the community!

https://t.co/N0ecT8P25X

[Marks Lab @DeboraMarksLab]

deboramarks: @LubanLab So naming goes by genome sequence identity?

[Marks Lab @DeboraMarksLab]

deboramarks: @LubanLab Why not SARS-CoV-3? What are the virology rules that I need to learn?

[Marks Lab @DeboraMarksLab]

deboramarks: RT @NotinPascal: We now have a dedicated repo for the initiative: https://t.co/G3XZiBvUsh. You are aware of a relevant assay that we have not yet included? Your favorite model is not there yet? Please see the repo instructions for suggestions of new assays & models

[Marks Lab @DeboraMarksLab]

deboramarks: RT @NotinPascal: With 94 assays total, ProteinGym is the largest curated collection of DMS assays to assess the ability of protein models to predict the effects of mutations -- but this is just the beginning, and we will continue to add new …

[Marks Lab @DeboraMarksLab]

deboramarks: RT @NotinPascal: A few updates regarding the ProteinGym benchmarks! https://t.co/IBlTSmjfxV

[Marks Lab @DeboraMarksLab]

deboramarks: @jmschreiber91 Worse than that - many methods cannot discover anything because ‘benchmarks’ are just inadequate for the goal

[Marks Lab @DeboraMarksLab]

deboramarks: RT @igisci: Happy #LGBTSTEMDay! Our artist @mpk_draws (she/they) was inspired to promote queer representation by illustrating some contemporary queer STEM researchers – keep reading to find out a little about each person pictured! 🏳️‍🌈🧵 1/6
… https://t.co/huUqQsJpqA

[Marks Lab @DeboraMarksLab]

deboramarks: @anshulkundaje Harvard - not officially allowed whatever the funding source. Been a huge problem during Covid …

[Marks Lab @DeboraMarksLab]

deboramarks: @kulesatony I like Abbas,Lichtman and Pillai cos it’s v simple

[Marks Lab @DeboraMarksLab]

deboramarks: @JohnAllenPaulos Equivalent to the white and black counters problem. Nice.

[Marks Lab @DeboraMarksLab]

deboramarks: Looking to buy a stock of swabs for nasal samples - first use case advertised on A is 'Gun Cleaning' - what does that tell us? https://t.co/lcIsMRmDNN