Dr. Kema Malki

Assay and Informatics Scientist
Illumina
PhD- Breitbart Lab

[Dr. Kema Malki @drkmalki]

The first paper from my dissertation!
https://t.co/qKnYQVW41S

[Daniel Portik @DPortik]

New details on the @PacBio SBB short read sequencing platform presented by Jonas Korlach at @agbt, including a video demo of the instrument. This is a big moment for @PacBio!

[Lior Pachter @lpachter]

The exciting reveal of Ultima Genomics last week was accompanied by the publication of four preprints. Intrigued by the potential of the technology, @sinabooeshaghi & I decided to take a look at the data. A 🧵 about our findings & a preprint we posted: https://t.co/0tesu0Xqac 1/

[Dr. Kema Malki @drkmalki]

@MikeTisza Not jumping in to say it’s better…but my team works on some cool stuff and I get to hear about exciting things colleagues are doing too. I just can’t share most of that information because it’a proprietary.

[Dr. Kema Malki @drkmalki]

@PhageHunterKW Thank you!

[Dr. Kema Malki @drkmalki]

Last day in an academic lab

[Dr. Kema Malki @drkmalki]

@PhageHunterKW Yeah I’m going to be starting at Illumina soon!

[Jeffrey Ross-Ibarra @jrossibarra]

As jobs start opening up, your regular reminder of a bunch of (successful) job applications, cover letters, research & teaching statements, etc. in industry and academia can be found here. Also please consider contributing your own! https://t.co/v0NChn40yj

[Lindsay Putman, Ph.D. @liputman]

Very excited to share our latest paper investigating microbial community assembly processes in serpentinizing groundwater. Lots of data and years of work with my wonderful collaborators @mary_sabuda @Michaelkubo @wbrazelton @schrenk_lab

https://t.co/4jaPeZSvoe

[Dr. Kema Malki @drkmalki]

@virome_girl @USFCMS @USFResearch Can’t wait to listen to it!!!

[Aude Bernheim @AudeBer]

A bit lost with all the new anti-phage systems out there? We developed DefenseFinder, a tool to detect all known anti-viral systems in bacterial genomes and conducted a large scale analysis on the anti-viral arsenal of prokaryotes. See more below ! (1/9) https://t.co/anzSNJEqAd

[Dr. Kema Malki @drkmalki]

@ImogenMireille What?!?

[Dr. Kema Malki @drkmalki]

L.A. : Considering vaccine mandates

Me:

[European Virus Bioinformatics Center @EVirusBioinfC]

How does dataset composition (viromes vs bulk metagenomes) & assembly fragmentation impact viral contig identification, virus taxonomic classification, & identification/curation of auxiliary metabolic genes? Paper co-authored by EVCB member @simroux_virus https://t.co/BtsbyLt9dG

[European Virus Bioinformatics Center @EVirusBioinfC]

Review on different approaches to bioinformatically predict the potential host(s) of #uncultivated #phages based only on genome sequence information. Paper co-authored by EVBC member @simroux_virus https://t.co/bQ5Q7Y5eI3

[Dr. Kema Malki @drkmalki]

@virome_girl @NatSawaya @karyna_rosario @MikeTisza @mikromara

[Dr. Kema Malki @drkmalki]

Our paper about the "Spatial and Temporal Dynamics of Prokaryotic and Viral Community Assemblages in a Lotic System" is out today in AEM. Learn about the impact of flow in shaping microbial communities. Thanks to all my amazing coauthors!!!
https://t.co/T8vXUvFjn6

[Dr. Kema Malki @drkmalki]

@coevoeco Congrats Jason!

[Jan @yawnxyz]

Evergreen Phage Meeting is B.A.C.K!! For those who love the phage meeting as much as we do, share share share and put this cover photo in your profile!! @phagedirectory @AdriCaroHM @MotherOfPhage @EvergreenPhage

[Dr. Kema Malki @drkmalki]

Officially submitted my dissertation and a revised manuscript! Now time to celebrate with all my new LA friends…

[Dr. Kema Malki @drkmalki]

@ninnamalki Love the concern