EpiGraphDB

A database and data mining platform for health data science

[Yi Liu @YiLiu6240]

4 year PhD studentship project fully funded by Roche on literature mining with LLMs and knowledge graphs
https://t.co/OiXIk9S0np

[EpiGraphDB @epigraphdb]

We are adding a user experience survey (https://t.co/VylJw7nb1Z) to the ASQ platform https://t.co/IBsIiWt8IC, which is a natural language query interface to EpiGraphDB.

Please give ASQ a try and provide your valuable feedback via the survey!

[Yi Liu @YiLiu6240]

Application closes in 14 days for this 3-year data scientist position in ML and NLP at @mrc_ieu. Get in touch if interested! #machinelearning #NLP

[Tom Gaunt @tomrgaunt]

Also pleased to share our preprint led by @YiLiu6240 on triangulating evidence in health sciences with Annotated Semantic Queries (https://t.co/qXy9TYspBf) @mrc_ieu https://t.co/WZZoMUKzIt

[Tom Gaunt @tomrgaunt]

Pleased to share our preprint led by @SobczykMaria comparing Mendelian randomization studies and randomized controlled trials using electronic databases with @mendel_random @mrc_ieu https://t.co/N4ReUX8wsc

[EpiGraphDB @epigraphdb]

R package [epigraphdb](https://t.co/q7LXdoO07b) for querying [EpiGraphDB](https://t.co/Gf2ejUQMzj) data has been updated on CRAN to v0.2.3 (a minor update). More updates for EpiGraphDB are in the work and to be released this year.

[Tom Gaunt @tomrgaunt]

Just a reminder that we are seeking health data scientists to join the @mrc_ieu - closing 31st Oct. https://t.co/jptZZwfMZX

[Tom Gaunt @tomrgaunt]

We are seeking two health data scientists and a database manager to join @mrc_ieu in Bristol - please get in touch if interested! https://t.co/aiG5NJNbNk

[Tom Gaunt @tomrgaunt]

New postdoc opportunity in Health Data Science at the MRC Integrative Epidemiology Unit (@mrcieu) at University of Bristol. Get in touch if interested! https://t.co/jzpyqPWJf6

[Tom Gaunt @tomrgaunt]

New data management post working on the @OpenGwas database in Bristol https://t.co/xH4hH0mV5h @mrbase2 @BrisCancerEpi @mrc_ieu

[EpiGraphDB @epigraphdb]

EpiGraphDB version 1.0 https://t.co/5Ky7wzPpd8 has been released. Here is the blog post summarising key features https://t.co/cWdwj9N1po.

[MRC IEU @mrc_ieu]

Now live! Mendelian Randomization dictionary, with >100 clear & comprehensive definitions & descriptions for doing, understanding & interpreting MR studies. @Caketin_Wade @DeborahLawlor2 @MCarol_Borges @explodecomputer @jack_bowdenjack Available here: https://t.co/6jou6Pj5PD

[george davey smith @mendel_random]

Fancy a one-stop shop for data mining the published literature which also enables analyses (including Mendelian randomization) of publicly available multiomic data? If so, EpiGraphDB could be for you https://t.co/t87abXF6pN

[Ben Elsworth @elswob]

As part of the @epigraphdb build process, we have inadvertently developed a universal Snakemake/Docker pipeline to create a @neo4j graph. Includes predefined schemas, QC steps, fast import, node conflict resolution. Reuse & collaborations most welcome :) https://t.co/KB2ryvGy0c

[Jie Zheng (Chris) @oldz84]

IEU blog: reducing drug development costs
https://t.co/TfRIt7PKKV

[Tom Gaunt @tomrgaunt]

Our 4-year Wellcome-funded PhD programme in Molecular, Genetic and Lifecourse Epidemiology is open for applications to start in Oct 2021 https://t.co/sSUGIcx1iG @BrisMolGenetic @mrc_ieu @BrisPopHealth

[Tom Gaunt @tomrgaunt]

Final reminder of this data science senior research associate post closing tomorrow!

[MRC IEU @mrc_ieu]

How will Brexit impact on food safety in Britain?
New blog from @marina_vab @PlotThiggins discusses their @JGIBristol data visualisation competition entry which used @foodgov data
https://t.co/PqZKNTg5Id

[EpiGraphDB @epigraphdb]

The `epigraphdb` R package is in the top 40 new CRAN packages.
https://t.co/h1w6wh7YmS