Ben Elsworth

Lead Data Engineer at @ukfuturehealth

[Ben Elsworth @elswob]

@jasemurphy perhaps @tomrgaunt and others at @mrc_ieu can answer this?

[bioRxiv @biorxivpreprint]

Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets https://t.co/6AltjIraQk #bioRxiv

[Ben Elsworth @elswob]

The excellent @archer_gemma and I would love for you to vote for "Researcher Searcher" at the Idea Factory 2022: People's Choice Awards @innovatekings https://t.co/3iYAK8CbSh

[Our Future Health @ukfuturehealth]

#Researchers - help us build a #TrustedResearchEnvironment that meets your needs by sharing your experience with us #healthdata #bigdata #TRE #datascience https://t.co/rbqCRxYL9a

[Ben Elsworth @elswob]

It's been a great 6 years at @mrc_ieu but really looking forward to starting work at @ukfuturehealth

[MRC_HGU @mrc_hgu]

We are recruiting for an early career group leader! Bring your cross-disciplinary expertise, innovative mathematical/computational approach to extract biomedical meaning from large datasets to help us understand the genetics of disease.Apply by October 21 https://t.co/MyQj9RYLoD

[yo yehudi stays away from humans! 🏳️‍🌈 @yoyehudi]

🚨Job vacancy alert 🚨

Interested in making meaningful change in the intersection between code, science and healthcare?

My team at @wellcometrust is hiring!

Some reasons to be interested in-thread, RTs appreciated for reach! 👇

[Tom Gaunt @tomrgaunt]

New postdoc opportunity in Health Data Science at the MRC Integrative Epidemiology Unit (@mrcieu) at University of Bristol. Get in touch if interested! https://t.co/jzpyqPWJf6

[Jerome Kelleher @jeromekelleher]

Only ONE WEEK left to apply for this job! These Senior Postdoc roles are pretty rare, so it's a great opportunity AND you get to work closely with Janssen (==industry taster). Please RT, or DM me for more info!

https://t.co/I10r3lN86m

[Hilary Martin @hilsomartin]

Seeking a senior staff scientist to join my team at the @sangerinstitute. Exciting projects in genomics of rare disease/complex traits/population genetics, using large-scale human genetic and electronic health record data. Closes 29 April. Please retweet! https://t.co/DSwkQAjQxB

[EpiGraphDB @epigraphdb]

EpiGraphDB version 1.0 https://t.co/5Ky7wzPpd8 has been released. Here is the blog post summarising key features https://t.co/cWdwj9N1po.

[Ben Elsworth @elswob]

Join me at #ElasticCC where I'll be talking about how we use Elasticsearch for @OpenGwas. This is @Elastic’s free technical event from the community, for the community — happening from Feb 26 - 27 https://t.co/ifxbscFHMW

[Jerome Kelleher @jeromekelleher]

📣 Job ad📣We are recruiting for a Postdoctoral Fellow to develop the next generation of imputation methods on Biobank-scale data using inferred trees. Funded by Janssen-University of Oxford Translational Genomics Fellowship. Details in🧵; apply here: https://t.co/NSf0Ysxxu4

[Ben Elsworth @elswob]

Great to see our work on the @Neo4j blog. Big thanks to @marina_vab @PlotThiggins @YiLiu6240 @tomrgaunt and the whole @epigraphdb team

[Neo4j @neo4j]

To provide access and transparency to the entire process, @mrc_ieu designed an open and generalizable Neo4j data integration pipeline to streamline their projects

https://t.co/hOg8MebEux
#DataIntegration #GraphDatabase #Neo4j

[Jerome Kelleher @jeromekelleher]

Looking for a PhD at the cutting edge of computational genomics and population genetics? Want to get experience of both academic and industrial research environments? Join my group at Oxford's Big Data Institute, in collaboration with Novo Nordisk!

https://t.co/MY9LfQDtUU

[Ben Elsworth @elswob]

As part of the @epigraphdb build process, we have inadvertently developed a universal Snakemake/Docker pipeline to create a @neo4j graph. Includes predefined schemas, QC steps, fast import, node conflict resolution. Reuse & collaborations most welcome :) https://t.co/KB2ryvGy0c

[Ben Elsworth @elswob]

@codexeditor @neo4j @mesirii @michaeldgrahams @mdavidallen @ryguyrg @jimwebber https://t.co/6oVtVdOzuY

[Ben Elsworth @elswob]

We've recently published MELODI Presto. An API that lets you rapidly retrieve mechanistic literature annotations for any PubMed query - https://t.co/sDJGFvS4qK https://t.co/BNbjxryiGL @tomrgaunt @mrc_ieu @elastic

[Ben Elsworth @elswob]

@OpenGwas @mrbase2 Back up now :)

[OpenGWAS @OpenGwas]

OpenGWAS currently down due to sever outage with our cloud hosting provider. Apologies to our users. Problem also affecting @mrbase2