cellfinder

Automated 3D cell detection and registration of whole-brain images. From the Margrie lab at @SWC_neuro. Part of the @brain_globe suite. Tweets by @adamltyson.

[cellfinder @findingcells]

cellfinder is now part of @brain_globe, please follow that account for further updates on the software!

[BrainGlobe @brain_globe]

Has anyone built software using BrainGlobe tools? We're creating a list of these third-party tools to advertise them. If you've developed anything that builds on BrainGlobe, please get in touch!

https://t.co/GTOPeriUB4

[BrainGlobe @brain_globe]

BrainGlobe has a new website - https://t.co/4CxUZAS6s2. We hope it's now easier to find all the information in one place. This is a work in progress, so if there's anything else you'd like to see, please let us know!

[Adam Tyson @adamltyson]

Official advert will follow soon.

The salary will be UCL Grade 8 (£47k+) for a fixed term of two years in the first instance.

The position would suit either a software engineer with an interest in neuroscience or a neuroscientist/anatomist with strong Python skills.

[Adam Tyson @adamltyson]

Thanks to @cziscience, we will soon have a research software engineer (RSE) position at @SWC_Neuro to work on @brain_globe and develop @napari_imaging plugins.

The post will be based in my RSE team at SWC, and collaborate with @ucl_arc.

Happy to chat to anyone interested.

[Adam Tyson @adamltyson]

Very pleased to be awarded CZI Essential Open Source Software funding to continue the @brain_globe work, and further develop @napari_imaging into a platform for neuroscientists.

[SWC @SWC_Neuro]

Last month, SWC Research Fellow @chrytsi hosted an @in2scienceUK placement, where students learned to validate cell counts obtained using the automatic cellfinder (@findingcells) tool. Read more: https://t.co/OdKFYsjLqq

[BrainGlobe @brain_globe]

This atlas is now available in @brain_globe for use with brainreg, cellfinder, brainrender etc.

Thanks to @clothier_sam and @ggFedericoRossi from @NeuralCompLab for packaging the atlas!

[Adam Tyson @adamltyson]

Talking about @brain_globe at @FENSorg this morning, poster 437. Come chat to me if you want to use our software or collaboratively develop new anatomy tools for the community.

[Adam Tyson @adamltyson]

I’m heading to FENS to present a poster about the @brain_globe initiative on Wednesday morning. Happy to chat to anyone who wants to use the tools. Board number S07-437.

[BrainGlobe @brain_globe]

Want to learn more about BrainGlobe tools, or just chat about computational neuroanatomy? @adamltyson will be at @FENSorg presenting at Poster Session 07 - Wednesday, 13.07.2022, 09:30 - 13:00.

[Adam Tyson @adamltyson]

One week left to apply for our Research Software Engineer positions. Come help set up the Neuroinformatics Unit at @SWC_Neuro & @GatsbyUCL. Deadline June 12th, message me for details. #RSEng

[Adam Tyson @adamltyson]

And if you want to join us at @SWC_Neuro and @GatsbyUCL to develop more software for neuroscience like this, we have two open positions.

https://t.co/nf5VWnqfyI

[BrainGlobe @brain_globe]

BrainGlobe now has new atlases! Brains (mouse, rat & zebrafish) and our first spinal cord atlas (mouse)! These atlases are available through the BrainGlobe Atlas API and will work with all our tools: https://t.co/BGR7nrEGVV. More details at https://t.co/0n5wl6Cppe 1/7

[Adam Tyson @adamltyson]

Two weeks left to apply for our Research Software Engineering positions at @SWC_Neuro & @GatsbyUCL. Come help build The Neuroinformatics Unit to develop state of the art software for neuroscience. Deadline June 12th, please RT!

https://t.co/nf5VWnqfyI

[jobRxiv @jobRxiv]

Research Software Engineer – Behaviour and Neural Data

Sainsbury Wellcome Centre (@SWC_Neuro), London, UK

https://t.co/HxfSgFaLPp

#ScienceJobs @GatsbyUCL @UCLLifeSciences @ucl @adamltyson #RSEng #neuroscience

[SWC @SWC_Neuro]

Check out these two new vacancies at SWC: https://t.co/8F2T3HM98k

[Adam Tyson @adamltyson]

Advert is now live, deadline June 12th. https://t.co/nf5VWn8Ea8

[Adam Tyson @adamltyson]

Job alert - 2 x Research Software Engineer at @SWC_Neuro & @GatsbyUCL. We’re building a new Neuroinformatics Unit to develop software to acquire, visualise and analyse neural data. Please RT and get in touch if you’re interested. 1/3

[Adam Tyson @adamltyson]

The positions are initially funded until 31 Oct 2025, and salary will be £45k-53k+. Please share, and if you have any questions, feel free to get in touch. 3/3

[Adam Tyson @adamltyson]

Advert up soon, but we’re looking for either an experimental or software background. Maybe you’re a PhD student/postdoc who enjoys writing code more than being in the lab. Maybe you’re a software engineer interested in research and applying your skills to novel data? 2/3