Francisco Berkemeier

Postdoctoral Researcher in the Boemo Group, at the University of Cambridge. Playing the guitar whenever biology and math allow me to.

[PNASNews @PNASNews]

One of the most-viewed PNAS articles in the last week is “3D epithelial cell topology tunes signaling range to promote precise patterning.” Explore the article here: https://t.co/6ASdWMO7Pc

For more trending articles, visit https://t.co/lc4P4KVdav.

[Francisco Berkemeier @fpberkemeier]

🧬 Can a genome language model learn where DNA replication begins? I'm glad to share our new preprint, in which we develop ORILINX, a gLM that can accurately predict which sequences can act as an origin of replication in human cells.
Check it: https://t.co/npkBNGXwlF

[Francisco Berkemeier @fpberkemeier]

Excited to share that our latest paper has been published in Nature Communications! 🧬 "DNA replication timing reveals genome-wide features of transcription and fragility"
🔗 Read the full paper here: https://t.co/nVbUZXTJk7

[Francisco Berkemeier @fpberkemeier]

I am truly grateful for the opportunity to have spoken at the Mathematics and Applications Colloquium at KAUST. Thank you to the organizers for the warm welcome and to everyone who took the time to attend the talk.

[Francisco Berkemeier @fpberkemeier]

Tomorrow, I have the privilege of speaking at the Maths and Applications Colloquium at KAUST. I'll be delving into the complexities of mathematical modelling of DNA replication in human cells. If you're in the area, please drop by and say hello! 🙂 https://t.co/fNxILpvgTp

[Francisco Berkemeier @fpberkemeier]

🔍Exciting postdoc position available in Mathematical Oncology at UCL, on mathematical modelling of CAR T-cell therapies and the tumour microenvironment. Application deadline: Dec 12. https://t.co/elDHyWiMDw
#MathOncology #PostdocJobs #CARTCells

[Francisco Berkemeier @fpberkemeier]

New preprint submission! Ever pondered the connection between evolutionary dynamics and the Axiom of Choice? Our latest work explores this intriguing intersection. We spotlight the essential role of symmetry in individual interactions. Discover more: https://t.co/8miFRJebsl

[Pau Formosa-Jordan @PauFormosa]

Interested in combining modelling and microscopy to study plant morphogenesis? Apply to our #rePLANT PhD project on the floral transition @mpipz_cologne in collaboration with the Coupland lab and @RichardSmithLab @JohnInnesCentre
Project: https://t.co/XpZS45HE3X

[Quanta Magazine @QuantaMagazine]

In 2D materials that are just one molecule thick, specific arrangements of molecules can confer useful properties. Fresh math has given researchers a powerful new way to study these patterns.
https://t.co/mfhzsqVPq8

[AI for Global Goals | OxML @GlobalGoalsAI]

🌟 A big round of applause for Prof. Pietro Lio's (@pl219_Cambridge) captivating closing talk on Day 3 of #OxML2023, where he discussed Graph Representation Learning and Diffusion: Models and Applications in Medicine! 🙌

Your expertise in this cutting-edge field has left us in awe, providing valuable insights into the transformative potential of graph-based approaches in healthcare.

Your talk was a remarkable way to conclude an inspiring day of discussions. Thank you for sharing your knowledge and pushing the boundaries of AI in medicine.

#MLxHealth #AIinHealthcare #AIinHealthcare #AI4GG #Globalgoalsai #SDGs #EHR #Biotech #MLxHealth #Deeplearning 🧬🎗️🚀

[Hiroaki Nishikawa @HiroNishikawa]

Sad news came in: Sergei Godunov passed away on 15 July, 2023 https://t.co/fNyZLbKT1k Godunov-type numerical methods are still widely used in CFD. I had a chance to see him in 1997 in Michigan at a symposium honoring his great contributions.

[Francisco Berkemeier @fpberkemeier]

@PaulinePfuderer Thank you :)

[Francisco Berkemeier @fpberkemeier]

Thrilled to announce the publication of our recent paper, delving into the heart of long-range cell-cell interactions and the Notch-Delta signalling pathway! https://t.co/Z81Q0hljxm

[Francisco Berkemeier @fpberkemeier]

@louisanicola_ Our job will slowly turn into editing and polishing, rather than creating (I can see this happening quite soon with coding), which in itself can still be an important and creative task. So there's hope we don't become totally obsolete. Great question

[Francisco Berkemeier @fpberkemeier]

What is required for sparse pattern selection via the Notch-Delta signalling pathway? Our new preprint "Coupling dynamics of 2D Notch-Delta signalling" is out on bioRxiv! 😀 Read it on:
https://t.co/9riwEoL3yg

[bioRxiv @biorxivpreprint]

Coupling dynamics of 2D Notch-Delta signalling https://t.co/QZ5G9SfbIt #bioRxiv

[Francisco Berkemeier @fpberkemeier]

Cambridge last week ❄️
@stjohnscam

[Francisco Berkemeier @fpberkemeier]

Delighted to have been part of a wonderful mini-symposium on bistable genetic switches at the @ecmtb2022 !! Here's the celebration afterwards :)

[Dave Richeson @divbyzero]

Add a coffee stain to your LaTeX document. https://t.co/QGTvPHOC46

[UCL IPLS @UCL_IPLS]

Great talks and turnout at our IPLS Meet-Up on Physics of Biological Networks this afternoon. Thank you Megan Joseph @ssimoncelli lab, @BillieMeadowcr1 @SaricLab, Tom Bland @goehring_lab, @fpberkemeier from Page lab, Neythen Treloar @cssb_lab and Julia Duque @G_Charras lab!