Top Tweets for #BulkRNAseq
📝 A #bioinfocodes post has been shared on “Bulk RNA-seq: A Transcriptomic Overview of the Tissue.”
✍️ Prepared by: Ayça Gökmen
🔍 Editor: İlke Ekin Akçalık, Fati Candan Serin
#rnaseq #bulkrnaseq #genetics #bioinfocodes
Register here - https://t.co/IAseu1zHsk #RNASeq #BulkRNASeq #NGS #Analysis #Visualization #transcriptomics
Register here - https://t.co/IAseu1zHsk
#RNASeq #BulkRNASeq #NGS #Analysis #Visualization #transcriptomics
🔬 At Alithea Genomics, we’re pushing the limits of RNA-seq to make transcriptomics scalable, affordable, and accessible. Here’s how we do it.
#RNAseq #transcriptomics #drugdiscovery #scRNAseq #bulkRNAseq
When do you need #singlecell resolution over a #bulkRNAseq approach? What value can single cell #multiomics bring to your research? We answer these questions and explore the familiar steps involved in conducting a #singlecellRNAseq experiment in our blog! https://t.co/MYkgdMUgTm
DECOMICS, a shiny application for unsupervised cell type deconvolution and biological interpretation of bulk omic data. #BulkRNAseq #CellTypeDeconvolution @BioinfoAdv
https://t.co/fjCKH0GMek
cypress: an R/Bioconductor package for cell-type-specific differential expression analysis power assessment. #BulkRNAseq #ExperimentalDesign #CellTypeSpecific #DifferentialExpression #StatisticalPowerAnalysis #CellTypeProfiling #Bioinformatics
https://t.co/jyj5jtY8Qt
5/🧬Cell composition estimates from the NNLS and MuSiC algorithms also improved after size-based normalizations in real #bulkrnaseq samples.
3/🧠 We applied a new integrated dataset of matched #snRNAseq, #bulkrnaseq, and imaging of neurotypical human cortex to deconvolve glial & neuron cell expression data using cell size normalizations. These data are now on Globus Endpoint. https://t.co/DyqPn3RIew
🔬 From Solos to Symphonies: 🎵 🧪 #SingleCellRNASeq - Individual cell whispers. 🎶 #BulkRNASeq - Gene harmonies. 📚 #NGSDNASeq - Genetic tales unfold. #GenomicsJourney 🧬🔍
⚠️ News ⚠️
The Bioinformatics Awareness Day organized by the Bioinformatics Core is starting today ❗️
#PowerAnalysis #FunctionalAnnotationTool #GoodPlots #BulkRNAseq #SinglecellRNAseq
Researchers investigate the potential roles of T cells in primary and metastatic brain cancer.
https://t.co/xIR4jCOtFq
Differences in T cells were seen between patients, with potential T cell-mediated tumor reactivity in some brain metastases.
#singlecell #scRNAseq #bulkRNAseq
Researchers integrate #scRNAseq and #bulkRNAseq data to identify marker genes of congenital pulmonary airway malformation.
https://t.co/7lwASYx4av
SPOCK2 could be a potential diagnostic biomarker gene, and STX11 and ZNF331 could serve as prognostic markers.
#singlecell
Another great collaboration on the regulation of Fshb transcription in gonadotropes with @BetaglycanDan and his lab, and the importance of in vivo validation. Congrats on the paper!
#pituitary #Fshb #ATF3 #bulkRNAseq #cellline #komouse
@TheEndoSociety
https://t.co/SNoy8irimv
Researchers investigate the association between macrophage activation and prognostic and therapeutic efficacy in ovarian cancer.
https://t.co/XJWEGGKiTd
Two new #ovariancancer subgroups were characterized by balance between macrophage subtypes.
#singlecell #scRNAseq #bulkRNAseq
Researchers profile renal cells from type 2 diabetes mice at the early stage of diabetic #nephropathy.
https://t.co/NF73lhQUT1
They reveal activation of the mechanosensitive signaling pathway MRTF-SRF in response to glomerular hyperfiltration ex vivo.
#scRNAseq #bulkRNAseq
Researchers combine #scRNAseq and #bulkRNAseq data to profile the tumor microenvironment in gastric cancer.
https://t.co/2Icj9ykQMW
IFNγ activated T cells and HLA-II-expressing macrophages were linked to better treatment response and increased overall survival.
#singlecell
Researchers investigate the epigenetic and transcriptomic effects of paracetamol in a model of early human brain development.
https://t.co/r7Q8Yy7rZT
They observed dose-dependent effects on cell proliferation and maturation.
@biorxivpreprint
#scATACseq #scRNAseq #bulkRNAseq
De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution. #DeepLearning #BulkRNAseq #SpatialDeconvolution #Bioinformatics @NatureComms
https://t.co/I1RDX71auP
Researchers characterize intercellular communication networks, specifically the crosstalk between cancer-associated fibroblasts and cancer cells, in malignant fluids from ovarian cancer patients.
https://t.co/pUaptaRkie
#bulkRNAseq #scRNAseq
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