Top Tweets for #HiChIP
🥃#SemiVision: Today I had the honor of giving a talk at the #HICHIP Alliance, with the topic:“From Sand to Silicon — and Now to #Glass: The Evolution of Chip Packaging.”
This slide is something I spent a lot of time putting together. While preparing it, I also gained a much deeper appreciation for the long history of glass — from ancient artifacts to today’s role in advanced semiconductor applications.
Let’s walk through this journey together.
Hope you’ll enjoy it as much as I did!

Excited to shared our most recent work out today @NatureSMB. We used #TurboID #CUTRUN #HiChIP to study the dynamics of all three #SWISNF subcomplexes targeting and their cooperation with AP1 members in shaping 3D enhancer landscapes #epigenetics #chromatin https://t.co/TpOOm0rp3J
📢 We present to you: "#HPRep: Quantifying Reproducibility in #HiChIP and PLAC-Seq Datasets" by Rosen et al.
🏛️@UNC @CCLRI #UniversityofCalifornia
🔗https://t.co/BmJUO3amAs
#Bioinformatics #chromatinspatialorganization @MDPIOpenAccess

How do disease risk variants affect their gene targets? H3K27ac #HiChIP points to chromatin looping, which brings promoters and regulatory elements close to target genes.
https://t.co/Yxd4jTbgqc
#dermatology
Our last @QIMRBerghofer #postdoc flash talk was from Jonathan Beesley (Cancer Genetics Group). He spoke about using #CRISPR screens of candidate #GWAS target genes and #HiChIP #chromatin looping studies to identify novel #breastcancer susceptibility genes #PAQ2021
Announcing the 2021 Arima #HiChIP Research Grant recipients! Congrats to @EshelmanMelanie (Penn State Health Children's Hospital), Liang Zu (@ZJU_China), & Swapan Nath (@OMRF). More on their research projects here: https://t.co/AMQ7xfSrZ5

📣 Today is the last day to submit your #HiChIP grant application. We've seen an uptick in submissions these last few days, but this is it! 🏁 Our team is looking forward to reading your submissions & announcing a winner in May. https://t.co/2owokKqR7r #3DGenomics #GWAS #ChIPseq

In celebration of emerging 3D genomic analysis technology, we’re offering research grants for projects that focus on promising #HiChIP analysis. Learn more & apply here: https://t.co/UvBysglBCJ
#genomics #sequencing #NGS #samplePrep

How is #HiChIP changing cancer research? Join us April 21st for a live webinar and Q&A with Dr. Montefiori from @StJudeResearch on a new subtype of acute #leukemia, and how advanced #genomics techniques are helping to paint the full picture: https://t.co/39gq6DD9vy #oncology
Pivot from #ChIPseq to capture spatial information key to understanding complex gene regulatory networks. Ready? Apply now for this #hichip grant to support deeper genomic analysis: https://t.co/5VMixnRFIK
#genomics #dna #epigenetics #labtwitter

#HiChIP analysis is changing cancer research. How? Join us in live discussion and Q&A on April 21st with Dr. Lindsey Montefiori from @StJudeResearch. Register here: https://t.co/NvbmSuOgao #genomics #clinicalResearch #oncology
Our paper led by @vivek_chandra01 and @SouryaBhattach5 on prioritization of genetic variants in immune cells using #HiChIP loops.Non-transcribing promoters acting as enhancers, ultralong-range loops linking target genes to >1Mb away variants validated by CRISPRi& basepair editing
Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants (Chandra et al.) https://t.co/3w7ygsyPSm

Cool Paper! #HiChIP helps describe the increase in enhancer dependence of cell-type–specific gene expression with developmental age. https://t.co/uX2ejFDQ1Q

In a recent paper published @springerNature Acta Neuropathologica, @JackieZhuCheng used a combination of #ChIPseq, #HiChIP, #RNAseq assays to profile the #epigenome perturbations induced by C11orf95-RELA in #pediatric supratentorial #ependymoma (1/n) https://t.co/A1g6JUz8Hi
Using #HiChIP sequencing on #failing and non-failing #HumanHearts,
@lekwen90 et al reveal putative novel causal #genes for #CardiacDisease and phenotype. https://t.co/KSCwr8Hfsl
@rsyf2 @RobbyAshburn

3rd paper of my lab
@jacksonlab
in 2020! Collaborate with Yijun and Chia-Lin on ChIA-PIPE for analysis & BASIC browser for visualization of #ChIAPET #HiChIP #PLACSeq #3DGenome #chromatin #pipeline #browser @ENCODE_NIH @4DNucleome https://t.co/WxblJdV9EM
List of assays offered at the #Epigenetics Initiative:
1) Mapping #chromatin accessibility (Bulk and #SingleCell #ATACseq)
2) Mapping DNA-protein binding: CUT&RUN / #ChIPseq
3) DNA #methylation assays
4) Mapping #3DGenome structure using #HiC and #HiChIP
@UHN @UHN_Research

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