Top Tweets for #Spatialtranscriptomics
๐ข New publication 'Poly pipeline: a polyvalent spatial transcriptomics workflow validated across #polyploid and #diploid organisms' by Pedro Carvalho, Tori Millsteed, and Robert Henry in Gigabyte.
#SpatialTranscriptomics
https://t.co/Bi9j3oOZGW
New Paper! Very happy to be part of this project! #spatialtranscriptomics
Using spatial transcriptomics to train AI to analyze routine H&E slides.
Together with Celso Camilo's group, we just published a new paper introducing MOSAIC, a computer vision method that predicts gene expression from histology and uses those predictions to infer cell identity.
The key idea was to look beyond each cellโs individual morphology and incorporate its neighbors, using the surrounding cellular context to guide the prediction.
Paper here: https://t.co/ge0eMbL0mZ
๐ข Call for Reading in @LiversMDPI
๐งฌ Liu et al. integrated single-cell and spatial transcriptomics to study ITH in HCC.
๐ฉบ Distinct macrophage functions were linked to spatial location.
๐ Read More: https://t.co/sWaszwKIgt
#HCC #ITH #SpatialTranscriptomics
7/7 This was a joint effort with the Leqian Yu, Taihang Liu and Weike Pei labs, and with Shigehito Yamada and Guojun Sheng. #embryology #spatialtranscriptomics #SCBEMs
Congrats to our CSP Macrogen ๐ฐ๐ท on becoming an #AteraFounder and establishing the first Atera system installation in Asia-Pacific! Proud to partner as they lead the next wave of spatial discoveries.
#Atera #SpatialTranscriptomics
Read the latest #research from @HasanovLab & colleagues on #Spatialtranscriptomics in #RCC, published with @SpringerNature in Signal Transduction and Targeted Therapy: https://t.co/Yq57LNq6Q9
@OSUCCC_James
Venturing into the world of spatial omics with our upcoming #ABRCMS2026 poster!
Congratulations to the team on getting this close to the finish line.
Code: https://t.co/jZ5eOraSQ7
Preprint: Coming soon, stay tuned! ๐
#SpatialOmics #SpatialTranscriptomics #Omics #DataScience
#BrainRegion specific #transcriptional & #PostTranscriptional responses to #Electroconvulsive stimulation in #MouseBrain #SpatialTranscriptomics https://t.co/wzf8GKRUno @QiQiu8788 @hao_wu_7 #spatialNTseq #TranslationalScience
Dr. Hui Wan will introduce SVC, a Vision Transformer-based framework for modeling RNA organization within cells.
๐ Online via Zoom
๐ Register: https://t.co/n1zetR0Bza #SpatialTranscriptomics #ComputationalBiology #AI #Biostatistics #Omics
Excited to share our latest study in Cardiovascular Research (@escardio)! ๐
Using CosMx WTX #spatialtranscriptomics (@brukerspatial) and paired plaque-PBMC #scRNAseq, we reveal critical cellular drivers of plaque instability beyond stenosis severity.
https://t.co/xd4ic3jGkL
#SpatialTranscriptomics
#ThoracicAorticDisease
Human aorta is a mm-thick layered organ (50~60 circumferential Elastic-contractile units in adult)
Its lumen & adventitia sides receive different chemical/mechanical inputs
Any phenotypic/signaling gradients of #SmoothMuscleCells across the aortic medial depth?๐๐
Here is a very cool & informative study from one of my most favorite scientists, Dr. Hiromi Yanagisawa @HYanagisawaLab ๐
Micro-biopsies RNAseq from 4 distinct layers in human aortic media
5 #BicuspidAorticValue + 4 Sporadic
Extracellular Matrix signaling (FN1/VCAN/MGP/POSTN) enriched in innermost layer (Beautiful POSTN IHC๐)
TGFฮฒ BAV > Sporadic
Inflamm Sporadic > BAV
Mechanosensing in innermost layer Sporadic > BAV๐ฅธ
#AortaEd
#JVSVS 2026 @JVascSurg
https://t.co/CAN46ZQsUH
Ecstatic that our @NatureComms article on #spatialtranscriptomics in #lung #COVID19 ranks in the 98th percentile of attention among more than 200,000 articles of a similar age across all journals! #Altmetric
https://t.co/Y49zgp78e7
๐บ๐ธ๐ฏ๐ตDon't miss a new study on regional arterial wall remodeling in peripheral #veingrafts, and meet the authors, Keisuke Kamada and Gale Tang!
READ MORE: https://t.co/y2OUfJ1eje
#spatialtranscriptomics #PAD @VascularSVS @UWSurgery
Welcome Dr. Muhammad Zubair Afzal, CQBโs new Pilot Project Leader! His team combines HiTIMED #DNA methylation + Visium #spatialtranscriptomics to map the breast tumor microenvironment before & after neoadjuvant therapy, hunting for biomarkers of response. https://t.co/qjflUeaB1D
I love how #spatialtranscriptomics can map #transdifferentiation in the actual tissue. In our @NatureComms article we show the spatio-temporal trajectory of AT2 #progenitor cells to the AT1 cell type in an attempt of the #lung to repair the damage caused by the #COVID-19 disease.
https://t.co/BV1hzKdpGf
๐ฌ Postdoc Position: Immunology and Spatial Transcriptomics โ Karolinska Institutet
๐ธ๐ช Stockholm, Sweden
๐ More Info: https://t.co/pYIH499W8H
#Postdoc #PostdocPosition #PostdocVacancy #Sweden #KarolinskaInstitutet #Immunology #SpatialTranscriptomics #CancerImmunology
๐งฌ Introducing a scalable Human Skin Cell Atlas: 818,951 cells across 34 public #scRNA-seq datasets, integrated with new Visium HD #SpatialTranscriptomics.
The atlas refines cell types, captures rare populations, and maps the pilosebaceous unit in space.
@janbaumbach
๐งต How can we reconstruct cellular spatial organization when spatial transcriptomics lacks single-cell resolution?
A new #GPB study introduces SPCC, a deep-learning framework integrating #scRNAseq and #SpatialTranscriptomics to infer spatial cellโcell interactions. 1/6
Proud to share our work in @eBioMedicine ๐combining #SpatialLipidomics & #SpatialTranscriptomics to investigate colon cancer heterogeneity
https://t.co/bl6UWb2GPf
๐จโ๐ฌ๐ฉโ๐ฌโ๐ค&๐ฐ@idisbaib @contracancerINV @SaludISCIII @CienciaGob @goib @upvehu @CICbioGUNE @SonEspases
๐ patients
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