Top Tweets for #fairSIM
You want to win? You have to fuel like a winner. See you at the 50 🫱🏻🫲🏾@CoachTricky23
A fun night of BHL Conference Championships ahead! We will start the party at 3:30PM EST 🍿
#FairSim
#BHL
#SECFootball
#BAMAvLSU
Reconstructing SIM data: #fairSIM in action - amazing crash course led by its creator @mueller_physics during #micronsim2022!
Day 3 of the #micronsim2022 @MicronOxford has started with a nice practical on using #fairSIM for reconstruction of #2DSIM data. Thank you @mueller_physics for your insightful session!
Today, I’ve covered during the 4-hour “#superresolution data handling” module of our @FijiSc #ImageAnalysis course in Turku various ways to reconstruct & analyze #STED, #SMLM, & #SIM data - That was quite a ride! 👩🏻🏫 Shoutout to Fiji’s #thunderstorm #frc & #fairsim plugins 💪😀
Late evening SIM image processing with @Ulrike_Boehm
Today @HHMIJanelia’s Optical Interest Group hosted @mueller_physics who presented the current state of the #fairSIM project. Not only did he highlight his @FijiSc fairSIM plugin, but also his team’s efforts to improve SIM scopes on multiple fronts... Just impressive! #openscience
SIM and widefield of diffusing beads. Boring sample, but nice to show system speed. 540 fps raw, 60fps reconstructed. Still needs a few tweaks to avoid artifacts, but not too bad for @NanoSand_Alice 's $20k microscope. #fairSIM
After two months away from the lab, we're slowly reopening, with sensible safety measures in place. A bit of alignment to do on @NanoSand_Alice 's DMD SIM (https://t.co/PPD52AiOJR), so it can produce some more data.
#fairSIM #superresolution
.@mueller_physics presenting the #fairSIM project, starting with where it fits in the pantheon of #SuperResolution methods
https://t.co/BxEj879ZSa
#neubiasBordeaux #Neubias
Over the next weeks, I will test various @Fiji plugins: Today, I downloaded & played with #fairsim, an #opensource reconstruction software for #SIM data - I really love @mueller_physics’s detailed @github documentation. More comments will follow 😉 https://t.co/ZMFRffzY3P
Microscope build and all that data processed by @NanoSand_Alice. For example, actin and lysosomes in HEK293T with mScarlet, 50ms per raw frame, widefield and SIM. My favorite dataset from that system so far. #fairSIM #superresolution
Video-rate SIM w/o waiting for images to reconstruct... fast, bespoke multi-color SIM coupled with real-time reconstruction on GPUs. Blueprints, code, raw data & documentation: https://t.co/fr9pgN6BXX #fairSIM #SuperResolution #nanoscopy #OpenScience
You know some insanity just happened when all the commentators, and players react in confusion at the same time. #FairSim
https://t.co/xPqFWd0j2L
Spend the afternoon adding Java and Beanshell example scripts for 2D... this should make life easier if you want to automate things around #fairSIM
https://t.co/U2dkJS3cpS
@HenriquesLab @HohlbeinLab @martweig @uschmidt83 Thanks for including #fairSIM. SIMCheck (https://t.co/OAbvF1bIyD) might also be a good fit, offering quality control of raw data and reconstruction, as well as some adjustment tools (top phase alignment, etc.)
Deep neural networks for SMLM: https://t.co/IjlbxCeJiW
Anyone interested in / working on trying this for (deconvolution-based) SIM reconstructions? We've thrown some ideas around in our 'PhD projects design contest'. And hey, we'd have a logo... #NeuralNetworks #fairSIM
Having a great, intense and very busy time at #IconEurope. Lots of discussion and ideas around #fairSIM. Also, not a lot of time to tweet.
Small updates to (2D) #fairSIM: Estimation of inter-angle intensity variations (check your alignment if they appear...) and somewhat more verbose feedback from the parameter fitting (don't blindly trust data with low modulation).
Two ITN PhD position in the Huser lab (Bielefeld University, Germany). Development of fast and advanced (SIM) microscopes and software (incl. some #fairSIM development, I'd guess 🙂 ) to image endothelial cells:
https://t.co/7NmKOJmIwy and https://t.co/73oYnGojgp
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