Top Tweets for #mosdepth
I'm very happy to announce that MultiQC v1.15 was just released! π
https://t.co/yHwXNtRcv9
It comes with π fixes for @10xGenomics #CellRanger fix, #mosdepth tweaks, and supports a new tool #Librarian to predict library type from FastQ base composition π΅π»ββοΈπ§¬ plus much more! π§΅
new tool, seqcover, to do exon-based coverage QC. get a static executable, give it a list of genes and list of coverage files (bed.gz from mosdepth) and get interactive html page.
example html here: https://t.co/snd3XQvvNI
static binary here.
https://t.co/ADDa5h6gN7
(1/2)
Added a bunch of plots for genome-wide and amplicon based QC mainly thanks to the amazing #mosdepth tool written by @brent_p @aaronquinlan. Reproducible, portable, scalable @nextflowio pipeline for #SARSCoV2 @illumina sequencing analysis! Please RT π₯³πͺπ€
Pipeline release! nf-core/viralrecon v1.1.0 (Assembly and intrahost/low-frequency variant calling for viral samples)
See the changelog: https://t.co/foAvbBXn9Z
mosdepth https://t.co/L1chMWwxCN by @brent_p processed my 3.5G #bam in 3m w 4 threads, could be faster if I do `-x`. Can run base-res+bin+threshold 1x,10x,20x +quantize mode sametime. I am switching all my #depth #calculation jobs to #mosdepth!! h/t @Evilution84 #bioinformatics
Our recent paper on distributed depth of coverage in #sequila with #apachespark inspired by #mosdepth
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations https://t.co/pnC8arRdDW #bioRxiv
Check out #mosdepth. Very fast genome and exonerated depth analysis with htslib and nim. Faster than bedtools and samtools. Mathematics. https://t.co/nUkIhwHaeo
Check out #mosdepth. Very fast genome and exonerated depth analysis with htslib and nim. Faster than bedtools and samtools. Mathematics. https://t.co/nUkIhwHaeo
my new project. mosdepth for fast, convenient depth/coverage calculation: https://t.co/kfBj26dkiZ
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