Top Tweets for #msbmethod
CellNeighborEX: a computational tool for exploring transcriptomic changes caused by direct cell contact in #spatialtranscriptomics data & indicating genes potentially involved in cell-cell interactions ➡️ https://t.co/3kbasdljcR from KJ Won @CedarsSinaiMed @UCPH_BRIC #MSBMethod
New methods for building &evaluating enhancer-based Gene Regulatory Networks: GRaNIE builds GRNs &GRaNPA assesses their biological significance & performance for predicting cell-type-specific #generegulation ➡️https://t.co/JXmOvOfgjS #MSBMethod #multiomics @zauggj @EMBLHeidelberg
CASB: a new method for sample multiplexing compatible with both scRNA‐seq & scATAC‐seq --> https://t.co/eLLxGp55kn #SingleCell #genomics #MSBMethod
A new algorithm uses healthy & disease gene expression data to predict modifier genes for monogenic diseases (applied to #CysticFibrosis & #SpinalMuscularAtrophy) --> https://t.co/iQoldYrZb7
#MSBMethod @NCIEytanRuppin @NCIResearchCtr
Interested in extracting context-specific essentiality networks from public large-scale #GeneEssentiality datasets? Check out CEN-tools: https://t.co/baqZwGmQE1
@emblebi @e_petsalaki #MSBMethod
An evolved #CRISPR‐based bacterial transcription activator system for programmable & combinatorial gene expression modulation in diverse bacteria --> https://t.co/IRUz3asGrD @harriswangnyc @wanglab_nyc @Columbia #MSBMethod #SynBio #ProteinEngineering
scClassify: a multiscale classification framework based on ensemble learning & cell type hierarchies, allows sample size estimation & joint classification of cells using multiple references --> https://t.co/GqeAP6hkwI @Sydney_Uni #SingleCell #MSBMethod #Genomics
An #imaging-based approach for pooled #GeneticScreening & morphology-based #transcriptomics, using high-throughput photoactivation followed by FACS to separate differentially labeled cells --> https://t.co/nmsX5ZwOyS
@dougfowler42 @uwgenome @UW #MSBMethod
Using #streptavidin‐based purification for interaction #proteomics? Check out this new protocol based on protease-resistant streptavidin to avoid contamination & improve protein identification rates --> https://t.co/DEfKgYD1hb
from Krijgsveld lab @dkfz @UniHeidelberg #MSBmethod
DEBRA (DESeq‐based Barcode Representation Analysis): an algorithm for reliable detection of differentially represented clonal lineages from #DNAbarcoding experiments --> https://t.co/JfbJXhFl94 @FIMM_UH @HiLIFE_helsinki @UCPH_BRIC #LineageTracing #MSBMethod
Automated sample preparation pipeline based on the SP3 method for low‐input tissue #proteomics. Promising application to clinical samples --> https://t.co/onH5pDKrd9
from Krijgsveld group @dkfz @UniHeidelberg #MSBMethod #ClinicalProteomics
A solid phase #transfection platform that enables CRISPR‐based genetic screens in arrayed format with flexible readouts --> https://t.co/Hj5iMz5QBu from B Mardin @BioMed_X #MSBMethod #CRISPRCas9
New automated end‐to‐end phosphoproteomic sample preparation method for multidimensional #CellSignaling studies --> https://t.co/jecRHJ7lKU from @juditvr @uwgenome
#proteomics #phosphoproteomics #MSBmethod
COMET: a computational tool that generates ranked predictions of single‐ & multi‐gene marker panels for a cell population of interest based on #SingleCell RNA‐seq data --> https://t.co/Ul8nJ36OXd
from @MeromitS @harvardmed @DanaFarber #MSBMethod
A new integrated workflow for crosslinking #MassSpectrometry from @RappsilberLab --> https://t.co/eTml0pr0ut #proteomics #StructuralBiology #MSBmethod
INKA (Integrative Inferred Kinase Activity): integrative data analysis approach ranking kinase activities in MS‐based phosphoproteome data (works with single samples) --> https://t.co/gbd7tkEavj #Proteomics #MSBMethod
TRAPP (total RNA‐associated protein purification): a new approach for fast, large‐scale identification of RNA‐binding proteins --> https://t.co/6BfM95KGhi D Tollervey & @RappsilberJuri @EdinburghUni #Proteomics #MSBMethod
TreeTop: new algorithm that models #SingleCell high‐dimensional data as an ensemble of trees to assess whether there is evidence of branching --> https://t.co/eiM1DDbub5 from M Claassen @ETH_en @IMSB_ETH #MSBMethod
Interested in MOFA by @OliverStegle @StatGenomics @RArgelaguet, just mentioned in @ReikLab? Read the #openaccess paper here -> https://t.co/3Qc7QCeqGF
More #MSBMethod papers in this collection -> https://t.co/zQIBiFf7zS #KSSinglecell
A year after launching our Methods section, we are really excited to see that it has quickly expanded! Read our recent collection of #MSBMethod papers here --> https://t.co/zQIBiFf7zS
#genomics #imaging #SingleCell #proteomics #ProteinInteraction #SysBio #Qbio #omics
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