#sedml - Twitter Hashtag

Medical Informatics Laboratory @waltelab

about 3 years ago

We are attending #HARMONY2023 this week (both on site and in front of our laptops). #SEDML #SemanticAnnotations #FAIRCA #andmuchmore: https://t.co/IdJnevtBEl Thanks for organising the meeting @reprobiomodels

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Dagmar Waltemath @[email protected] @dagmarwaltemath

over 3 years ago

#COMBINE2022 breakout ongoing: Lucian Smith giving an overview of previous #SEDML versions and drafting the vision for the next version(s). broader support for modeling languages and frameworks, connect up different tools, be compatible with workflow descriptions.

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David Nickerson @andreshouse

over 4 years ago

when you finally get something to run and have no one to talk to... simulation results using #sedml with the @Bio_Sims python utilities to handle the COMBINE archive & SED-ML and using libCellML to handle the CellML 2.0 models.

andreshouse's tweet photo. when you finally get something to run and have no one to talk to... simulation results using #sedml with the @Bio_Sims python utilities to handle the COMBINE archive & SED-ML and using libCellML to handle the CellML 2.0 models. https://t.co/StPore2yYE

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Prof. Dr. Andreas Dräger @dr_drae

almost 5 years ago

Our new ✨publication✨ appeared in @OUPBioinfo: The #Java library #SBSCL simulates systems biology models and analyses them in various computational frameworks. It supports #SBML, #SEDML, and the #COMBINE archive format and corresponding ontologies. ⬇️⬇️

Bioinformatics and Data Analytics Team (BioDatA) @DraegerLab

almost 5 years ago

Simulating models in biology is easy with #SBSCL for constraint-based analysis, stochastic simulation, and ordinary differential equation systems. It runs on any #Java VM, is benchmarked on official test cases, and supports various standard formats. ☞ https://t.co/FRwRrbIHFW

DraegerLab's tweet photo. Simulating models in biology is easy with #SBSCL for constraint-based analysis, stochastic simulation, and ordinary differential equation systems. It runs on any #Java VM, is benchmarked on official test cases, and supports various standard formats.
☞ https://t.co/FRwRrbIHFW https://t.co/XSlH0DWumZ

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Reproducible Biomodeling @reprobiomodels

almost 5 years ago

ICYMI: 2021 Network Modeling Virtual Summer School & Symposium - Day 4 (Part 2) https://t.co/49SkmOlMp5 #Antimony #BioModels #BioModeling #Code #libRoadRunner #networkmodeling #networkmodeling2021 #PEtab #SBML #sbmllint #SBstoat #SEDML #Tellurium

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Reproducible Biomodeling @reprobiomodels

almost 5 years ago

ICYMI: 2021 Network Modeling Virtual Summer School & Symposium - Day 4 (Part 1) https://t.co/uDly0sPQR6 #Antimony #BioModels #BioModeling #Code #libRoadRunner #networkmodeling #networkmodeling2021 #PEtab #SBML #sbmllint #SBstoat #SEDML #Tellurium

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Reproducible Biomodeling @reprobiomodels

almost 5 years ago

ICYMI: 2021 Network Modeling Virtual Summer School & Symposium - Day 3 (Part 1) https://t.co/na8q9X3n7D #Antimony #BioModels #BioModeling #Code #libRoadRunner #networkmodeling #networkmodeling2021 #PEtab #SBML #sbmllint #SBstoat #SEDML #Tellurium

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Reproducible Biomodeling @reprobiomodels

almost 5 years ago

ICYMI: 2021 Network Modeling Virtual Summer School & Symposium - Day 1 (Part 2) https://t.co/A3YCZoGxaT #Antimony #BioModels #BioModeling #Code #libRoadRunner #networkmodeling #PEtab #SBML #sbmllint #SBstoat #science #SEDML #Tellurium

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Reproducible Biomodeling @reprobiomodels

almost 5 years ago

ICYMI: 2021 Network Modeling Virtual Summer School & Symposium - Day 1 (Part 1) https://t.co/fqUYDIaOl0 #Antimony #BioModels #BioModeling #Code #libRoadRunner #networkmodeling #PEtab #SBML #sbmllint #SBstoat #science #SEDML #Tellurium

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Medical Informatics Laboratory @waltelab

almost 5 years ago

Congratulations on the successful defense! In her masters thesis @LGutebier integrated #COVID simulation studies with the #COVIDGraph @HealthECCO. You can explore the data resource online, find out how: https://t.co/44ZXjz5fiq @biomodels @sbmlnews #MaSyMoS #SEDML #Hooray

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Reproducible Biomodeling @reprobiomodels

about 5 years ago

Join us on Wednesday, June 9th at 1 PM PDT to hear from Dr. David Nickerson (@andreshouse) about the library, libOmexMeta, which can be used to annotate SBML models. #libOmexMeta #sbml #sbmlmodels #plos #computationalbiology #cellml #sedml (1 of 3)

reprobiomodels's tweet photo. Join us on Wednesday, June 9th at 1 PM PDT to hear from Dr. David Nickerson (@andreshouse) about the library, libOmexMeta, which can be used to annotate SBML models.

#libOmexMeta #sbml #sbmlmodels #plos #computationalbiology #cellml #sedml

(1 of 3) https://t.co/RGH72mENdY

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COMBINE @combine_coord

over 5 years ago

The first #SEDML breakout at #COMBINE2020 is happening in 20 minutes (https://t.co/gjBCrxikaX), being led by @konigmatt and I'm sure with a number of editors past and present in the "room"

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Dagmar Waltemath @[email protected] @dagmarwaltemath

almost 6 years ago

#combine2020 now Wolfgang Müller introduces recent works and goals of the @FAIRDOM_eu team. #COMBINEArchive #ModeleXchange #SBML #reproducibleModels #SEDML #BiVeS @binfalse @SemsProject + new roles & transparent licences + wide scope and users from 47 countries / 200+ projects

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David Nickerson @andreshouse

over 6 years ago

#sedml session at #HARMONY2020 starting now in the Ickelton room upstairs.

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Dagmar Waltemath @[email protected] @dagmarwaltemath

over 6 years ago

Short reminder / deadline extended. Come to Bonn and get help standardising your simulation study using #sbml #cellml #sedml #sbgn #reproduciblemodeling #biomodels https://t.co/OnhF3RZpZT

dagmarwaltemath's tweet photo. Short reminder / deadline extended. Come to Bonn and get help standardising your simulation study using #sbml #cellml #sedml #sbgn #reproduciblemodeling #biomodels https://t.co/OnhF3RZpZT https://t.co/HBh5QeH2pa

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COMBINE @combine_coord

almost 7 years ago

@andreshouse opening the last day of #COMBINE2019, presenting semantic annotations, versions, #SEDML and #CellML in #PMR to unexpectedly "many people for a Friday morning session"

HITS @HITStudies

almost 7 years ago

Last day at #COMBINE2019 starts with David Nickerson @andreshouse

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Dagmar Waltemath @[email protected] @dagmarwaltemath

almost 7 years ago

Impressive demonstration of what you can achieve when using #sbml packages, #sedml and other #combinestandards in model building and analysis by @konigmatt at #combine2019