Hequan Sun

bioinfo

[nature @Nature]

Nature research paper: The phased pan-genome of tetraploid European potato

https://t.co/xGfQoChqrW

[Schneeberger lab @LabSchneeberger]

📢 Excited to share our work out now in @Nature! 📢

We present the phased pan-genome of the European tetraploid potato, based on 10 historical cultivars representing 85% of European potato diversity.

Learn more below!

🔗 https://t.co/JNuZEMWKxQ

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[Schneeberger lab @LabSchneeberger]

Somatic mutations introduce new phenotypes that are often used in modern plant breeding. Our work now provides insights into somatic mosaicism at the cellular level. We show that in trees, most mutations are specific to cell layers of the meristem.
https://t.co/peOLiUjvnk

[Michael Schatz @mike_schatz]

Super excited to announce "Jasmine and Iris: population-scale structural variant comparison and analysis" by @melanie_kirsche, Guautam Prabhu, @rshermanjhu, @bohan_ni, @alexisjbattle & @s_aganezov. @JHU_BDPs @JHUCompSci https://t.co/5U3bqyT6hk

[Schneeberger lab @LabSchneeberger]

Assemblies of brassicaceae genomes (poster #186, presenter Raúl Y. Wijfjes)
Assembly of polyploid potato using ONT (poster #466, presenter @lisa7cristina )

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[Schneeberger lab @LabSchneeberger]

Raúl Y. Wijfjes would present his PhD thesis work on H. Incana as a new model species (Saturday 6.20pm, Pacific D).

We also have 3 posters on:
Identification of layer specific somatic mutations (poster #126, presenter @itsmanishgoel )

2/3

[Schneeberger lab @LabSchneeberger]

Group Schneeberger is at #PAG30. @hequan_sun would give a talk on the first haplotype phased assembly of tetraploid potato (Sunday 4.20pm, Pacific D). Xiao Dong @justdx0713 would present the new Arabidopsis Thaliana reference genome (Monday 2.02pm, Pacific F-G).

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[Hequan Sun @hequan_sun]

math them?

[Luca Comai @lucacomai]

So, you think you know what potato variety you are working with? Admirable sleuthing by Kirk Amundson in tracking down the elusive origin of a potato clone once thought to be Desiree. The story of Red Polenta: https://t.co/abEMAJ7I9K

[Adam Phillippy @aphillippy]

The #T2T team is excited to release our first draft of a complete, diploid human genome for the @GenomeInABottle benchmark sample, HG002! Links to the data and assembly can be found here: https://t.co/tYb4oamaVS 🧵

[Worldly @WorldlyHQ]

If you want to start this type of farming, please like and retweet.

[André Marques @marques_et_al]

RT Please! PhD project open in my group to study adaptation to holocentricity in carnivorous Drosera species! If you like bioinformatics and cytogenetics that's the perfect position for you! APPLY NOW!

[Heng Li @lh3lh3]

T1K, a new HLA and KIR genotyper developed by Li Song. More data types (exome, WGS, RNA-seq and smart-seq), more genes (HLA class I & II and KIR), comparable or higher accuracy, and perhaps simpler to install and use. HLA typing can be part of the standard analysis.

[Nicholas Provart @bar-plantbio.bsky.social @BAR_PlantBio]

Excited for the launch of the V12 Arabidopsis annotation effort for the Col-0 genome from T2T assemblies! Thanks to Tanya Berardini @tair_news, Francoise Thibuad-Nissen @ncbi, Korbinian Schneeberger @LabSchneeberger et al...we'll need lots of community help too! #ArabidopsisV12

[Nature Communications @NatureComms]

Transparent peer review for all!
We will publish reviewer reports and author responses for all research articles submitted after November 1st
#OpenScience
https://t.co/9wOOv3U6y1

[eLife - the journal @eLife]

Today, we’re introducing a new model that eliminates accept/reject decisions.

By publishing every paper with eLife reviews as a Reviewed Preprint, we plan to restore autonomy to authors, ensuring that they will be judged by what, not where, they publish. https://t.co/OAsiOVFStI

[Luca Comai @lucacomai]

Do you love unusual biology and genetics? Postdoc position available in potato haploid induction at UC Davis: https://t.co/P8f4yIaf4A

[Charlie Underwood @charliesousbois]

We are looking for a new colleague to support our research on meiosis, chromosome biology and plant reproduction @mpipz_cologne @Raph_Mercier Please share by RT!

https://t.co/XyouTBEHej

[Nature Medicine @NatureMedicine]

In a study involving more than 100,000 individuals in the #UKBiobank, a #NeuralNetwork model trained on #Metabolomic data can predict #disease risk for over 20 conditions and adds predictive information over clinical variables for eight common diseases.

https://t.co/HN2xL87ovU

[Jean Claude NIYOMUGABO @jcniyomugabo]

Harvesting time from sustainable agricultural practice.