Heroen Verbruggen

seaweed nerd -- evolution, bioinformatics, visualization

[Ryo Yokoyama @yokoyama_ryo]

Red macroalgae in the genomic era - Borg - New Phytologist - Wiley Online Library https://t.co/hDHs2OhaQi @NewPhyt

[🧬Jacob L Steenwyk @jlsteenwyk]

💈𝐈𝐧𝐭𝐫𝐨𝐝𝐮𝐜𝐢𝐧𝐠 𝐭𝐡𝐞 𝐂𝐥𝐢𝐩𝐊𝐈𝐓 𝐛𝐫𝐨𝐰𝐬𝐞𝐫 𝐚𝐩𝐩💈

• Offload more of your #phylogenetic workflow to our cloud service🌤️

• Simply select one or more alignments to trim and leave the rest to us☺️

• View and download results🫡

🔗: https://t.co/ItpVSiW58k

[Vini Salazar @vinisalazar_]

My first PhD chapter is out on @GigaScience!

We introduce Metaphor, a Snakemake workflow for annotation, assembly and binning of metagenomes.

Do you wonder about what's the best way to analyse your metagenomic data?? Follow along for some pointers 🧵https://t.co/Mstxl2SVCr

[Marta Álvarez @MartonaAlvarez]

Here is the last from the lab of Comparative Genomics with @JordiPaps @meleonorarossi @_AlexBowles. A nice review of trees, genomes, and cells. @BristolPalaeo

https://t.co/oyd0AridUb

[A. Murat Eren (Meren) @merenbey]

I am struggling with writing, and I just posted this to our lab channel to vent. I thought I'd also send it here for the PhD students I do not advise.

Just in case realizing that you're not alone in that struggle was the only thing you needed to start writing that paper :)

[Jan de Vries @Jan_de_Vries]

You have a degree in #Biology, #Biochemistry, Applied Computer Science (or related) & want to delve into Computational Biology & #Bioinformatics for your Master's? Apply for our program @uniGoettingen covering a broad range of topics
https://t.co/QlrE8VaqN1

[B.L.D Uthpala Pushpakumara @uthpala92]

Second paper from my PhD is now published!
We provide a comprehensive study of the bacterial microbiome of the coral skeleton algal symbiont Ostreobium and shed light on signatures of phylosymbiosis.
@heroenv @Filledesalgues @kt_microbes
Read here:
https://t.co/G6nqsvhVmk

[Raquel Peixoto @peixotors]

Beautiful review exploring the molecular mechanisms underlying coral-microbiome interactions at @FEMSmicro by @AMohamed85 @DiatomsBacteria et al. https://t.co/5WC2LxWbUx

[del Campo Lab @delCampoLab]

🚨 New Lab Pub 🚨 "Beyond the Symbiodiniaceae: diversity and role of microeukaryotic coral symbionts" (https://t.co/BbivBDnBgs). Here we describe the numerous protist symbionts of corals and their suspected roles in the holobiont! 🪸🦠

[Thomas Elliot @tom_b_elliot]

Reviewing for @MDPIOpenAccess is a waste of time and a corruption of the scientific peer review process. Yesterday I sent back a second major revision, frustrated that the authors had ignored many of my comments. Today, paper is accepted. What a farce.

[Karina B. Xavier @KarinaXavierLab]

Host-Microbe Symbioses PhD Summer school @IGCiencia read more and register here https://t.co/p6k26iinRP

[B.L.D Uthpala Pushpakumara @uthpala92]

First paper from my PhD is now published online🥳

We show the promise of 16S rRNA gene-based co-occurrence networks as a hypothesis-generating framework to study microalgal-bacterial interactions. Have a read here: https://t.co/8d5r2Gbott
@heroenv @kt_microbes @Filledesalgues

[Vini Salazar @vinisalazar_]

Do you want to recover MAGs from your metagenomic data?

Check out our new pipeline, Metaphor! 🚀

Featuring multiple binning algorithms to optimise MAG recovery + flexible options for pooled assembly & binning: https://t.co/6RmXeAVJtQ

Amazing group effort w/ @MDAP_Unimelb!

[Fran Romero-Campero @fran_rom_cam]

Tree plots summarizing GO term enrichment in #microalgae #omics analysis are now implemented in our web tool AlgaeFUN with MARACAS

https://t.co/LYvFSRfkXA

https://t.co/9BgrObVlNl

@AnaBelenStyles @christina_arvan @PedrodelosReyes @ramosgonzmarc

[Kshitij Tandon, PhD @kt_microbes]

More on #coralskeleton We provide a compendium of coral associated microbial MAGs, explore their functional and symbiosis forming capabilities. Great Collab with @MicroSensing @heroenv @momedinamunoz @Fra_Ricci_ Linda Blackall Joana Costa https://t.co/YV9kI0cUHk

[Laszlo G. Nagy @laszlognagy]

Detecting contamination in eukaryotic genomes, a new tool from the lab. Stunned by the extent of bacterial and fungal contamination of genomes. We show that contamination strongly impacts ancestral genome content analysis in the eukaryotes. Thread 1/6
https://t.co/C3zJXN0e7U

[B.L.D Uthpala Pushpakumara @uthpala92]

Our preprint is out! We provide a comprehensive study on the microbiome of the major coral skeleton algal symbiont Ostreobium and shed light on phylosymbiotic signatures.
Have a read here: https://t.co/bzfYqbwF0O

[Jason Stajich @hyphaltip]

Preprint on viral discov in endolithic #metagenomes @casettron @ClaudiaColeine @LauraSelbmann @ManuDelBaq w/ @sgtringe @simroux_virus & @NSURPorg ugrad M Saunders. Highly diverse & unknown #viruses may enhance #Antarctic endoliths' adaptability https://t.co/itArJSRd1e 🪨🦠🧬🇦🇶

[Justin Maire @Justin_Maire]

Our latest preprint is out! An in-depth look at bacterial aggregates in corals, featuring lots of microscopy, metagenomics, everyone's favorite coral symbiont aka Endozoicomonas, and chlamydiae as unexpected guest stars.
Have a read here: https://t.co/L8rgcTM3Hr

[Vijini Mallawaarachchi @viji112]

Excited to announce that MetaCoAG, my assembly graph-based metagenomic binning tool, is now officially available on PyPI. 🤩 You can download and install MetaCoAG using pip.
#Bioinformatics #metagenomics #binning #pypi

https://t.co/i0HFbWnhmY