Ingvild E. Bjerke

Neuroscience PhD • Cellular & anatomical development of the rodent brain • Open science • Postdoc, Kim Lab, Penn State University 🐁🧑‍🔬🔬🧠

[Ingvild E. Bjerke @ingvildeb]

We have created a developmental mouse brain atlas (DeMBA) that covers every postnatal day from 4 to 56!🐁🧠 Segmentations from Allen mouse brain CCF, integrated in tools for spatial analysis. Read the preprint at https://t.co/kqjhZUj2dg

With @KlevenHeidi @maja_pucha ++

[LifeCanvas Technologies @LifeCanvasTech]

Save room in your #SfN25 itinerary for some more 3D 🧠 data exploring research areas from brain development to neuroimmune pathways! Next week's poster lineup features presentations from Drs. @ingvildeb, @EloraMidavaine, Quan Jiang, @ZhennWang, & Yidan Chen.

[Ingvild E. Bjerke @ingvildeb]

When and where do #oligodendrocytes emerge during #development? Our recent data acquired in @yongsookimlab using @LifeCanvasTech SmartSPIM reveals a striking spatiotemporal pattern starting in the spinal cord and brain stem. For more details, come see my poster at #SfN2025 🐭🧠🔬

[yongsookimlab @yongsookimlab]

Excited to announce our NIH RM1 grant, investigating impact of ~100 neurodevelopmental disorder risk genes using mice as an animal model. https://t.co/AXWNDsc3wj

[Dr Jee Hyun Kim @About_Memory]

Latest from lab: The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation https://t.co/vTTXPJ5Ado registered to the atlas
@AllenInstitute a truly monumental work by
@ingvildeb partnering @HumanBrainProj

[John J. Foxe @JohnnyFoxe]

IMPORTANT PERSPECTIVE in @EJNeuroscience
Data sharing and re‐use as a moral imperative in animal research
Ingvild E. Bjerke @ingvildeb
Universitetet i Oslo @UniOslo
@FENSorg @WileyNeuro #Neuroscience
https://t.co/ekUwRQQ4qp

[Ingvild E. Bjerke @ingvildeb]

This paper paper represents years of work in #neuroanatomy, #neuroinformatics and #openscience - thanks to @KlevenHeidi, @SchlegelUlrike and all co-authors for making it possible!

[Ingvild E. Bjerke @ingvildeb]

Interested in the basal ganglia, but not familiar with the anatomy of the regions?

We have investigated names and boundaries across major rat & mouse brain atlases, and summarized it all in our latest publication🐀

Out now in Scientific Data: https://t.co/llaqCjrtbZ

[yongsookimlab @yongsookimlab]

Still looking for a postdoc with systems neuroscience skills; in vivo activity recording and manipulation with specific behavioral tasks. NIH funded position available. Please email me. https://t.co/efhasoTmh0

[Heidi Kleven @KlevenHeidi]

Are you working with the developmental mouse brain 🧑‍🔬🐀🧠 and want to analyse it with a 3D brain atlas? 🧑‍💻🌐🧠🗺 Come see our poster at poster board 505! #FENSForum2024 @FENSorg @

[Ingvild E. Bjerke @ingvildeb]

Come see Heidi’s poster on Saturday 🙌 #FENS2024

[Heidi Kleven @KlevenHeidi]

We're presenting our poster on the Developmental Mouse Brain Atlas (DeMBA) and how to use it in analysis at #FENS2024 🐀 🧠 Come talk to us on Saturday morning @FENSorg

[Ingvild E. Bjerke @ingvildeb]

Find all the data & tools on the @EBRAINS_eu Knowlege Graph! #openscience #development

[Ingvild E. Bjerke @ingvildeb]

We have created a developmental mouse brain atlas (DeMBA) that covers every postnatal day from 4 to 56!🐁🧠 Segmentations from Allen mouse brain CCF, integrated in tools for spatial analysis. Read the preprint at https://t.co/kqjhZUj2dg

With @KlevenHeidi @maja_pucha ++

[Maja Puchades @maja_pucha]

I am really delighted to present our EBRAINS Brain atlases and related analysis tools at the annual StratNeuro retreat in Djurönäset !
Great students! Thanks to StratNeuro and INCF and Mathew for organizing this ! #EBRAINS #StratNeuro

[Ingvild E. Bjerke @ingvildeb]

Interested in #dopamine and #development?

We quantified dopamine receptor 1- and 2-positive cells in the developing and adult mouse forebrain 🚼 🐭

Check out the preprint https://t.co/jmUZppEdU6

Thanks to everyone on the team and especially @harrycarey2, @About_Memory !

[Ingvild E. Bjerke @ingvildeb]

Our paper on the Waxholm space rat brain atlas is now out in Nature Methods 🐀🧠 thanks to the whole team including co first author @KlevenHeidi for making this happen!

Explore the atlas in the @EBRAINS_eu interactive atlas viewer: https://t.co/IgwKzloeX7

[Nature Methods @naturemethods]

Update to the Waxholm Space atlas of the rat brain! This version expands the previous version with 112 new and 57 revised structures, including more detailed annotations of the cortex, striatopallidal region, midbrain and thalamus.

OA paper:
https://t.co/hwe8hocJfS

[Neurobiology of Vital Systems @MQneurovitalsys]

A really exciting week for our team - we think we've made a Killer App for analysis of mouse brain histology. It's fast, it's accurate, and it's free! Check out the paper at Nature Communications:

https://t.co/BgLaQ4wHIM

[Ingvild E. Bjerke @ingvildeb]

Read about DeepSlice - a fully automatic method to align your coronal mouse brain images to the Allen CCF🧠🐁