J. Allen Baron

[J. Allen Baron @jabaron_phd]

@ShihchengGuo @diseaseontology We'd love to hear more about your work and interest in the @DiseaseOntology. Feel free to reply here or contact us directly via our Contact page.

https://t.co/L3RuA59mjD

[J. Allen Baron @jabaron_phd]

@ShihchengGuo @diseaseontology Some data are also released as table-delimited files (#DOreports:) to enhance #DataAccessibility. These are updated with each monthly release.

https://t.co/5zLgGJYWFw

[J. Allen Baron @jabaron_phd]

@ShihchengGuo @diseaseontology The data are also accessible via a #SPARQL endpoint (see https://t.co/1r6Vxp6EXv).

Happy to talk about this more if needed (https://t.co/L3RuA59mjD)

[J. Allen Baron @jabaron_phd]

@ShihchengGuo @diseaseontology No. It depends on the database you want to integrate data into.

The data are released on GitHub (https://t.co/GnE3BkNFgz) in standard ontology formats (.obo, .owl, .json).

[J. Allen Baron @jabaron_phd]

Come chat with me this evening about using @diseaseontology in your research.

Poster 617S #TAGC24
#DiseaseResearch #DiseaseModels

[J. Allen Baron @jabaron_phd]

Did you know that the @diseaseontology is used by @alliancegenome (and all the related model organism databases) for disease annotation?

Love the collaboration!

Tools workshop at #TAGC24

[Rat Genome Database @ratgenome]

Join us at the Tools for Comparative Genomics Workshop by @alliancegenome! And Explore our Poster #612S ‘Upgraded genome browsers at the RGD’, Mar 9, 2024, @ 2-4 & 8-9 PM, EST, respectively. Also, visit the Alliance booth (#620 & #622) for more! #ComparativeGenomics #TAGC24

[FlyBase @FlyBaseDotOrg]

Join us for the Alliance workshop ‘Tools for Comparative Genomics from the Alliance of Genome Resources’ TODAY at 2pm, National Harbor 4. Nat. Harbor is above the Ballroom level; take the escalator between the Potomac & Maryland wings (elevator is just past escalators). #TAGC24

[J. Allen Baron @jabaron_phd]

Took advantage of the Creative Corner at #TAGC24 to make DNA #origami with a custom sequence during a break.

[J. Allen Baron @jabaron_phd]

For those not attending the conference, the poster is available at https://t.co/BmeyVf6Lmc. Feel free to reach out!

#SemanticWeb #ConnectingData #SPARQL

[J. Allen Baron @jabaron_phd]

Looking forward to the start of The Allied Genetics Conference (#TAGC24) tomorrow and representing @diseaseontology in-person.

Msg me or find my poster (617S) to talk about how the Disease Ontology can help advance your #DiseaseResearch or learn about @globalbiodata.

[J. Allen Baron @jabaron_phd]

For a view of #TAGC24 presentations about related diseases, take a look at https://t.co/YpUXYJrQ3d.

#ConnectingData

[J. Allen Baron @jabaron_phd]

If you're attending #RDDNIH on #RareDiseaseDay2024 , come visit me at *poster 71* and learn what @diseaseontology is all about!

Connecting & standardizing data to make it more #FAIR.

[J. Allen Baron @jabaron_phd]

I look forward to representing the @diseaseontology at #RareDiseaseDay. Come learn how the DO makes data more FAIR!

[Disease Ontology @diseaseontology]

Join the #DOteam as we present at @RareDiseaseDay at @NIH on February 29th. We’re looking forward to seeing everyone!

#RareDiseaseDay #RareDisease #DiseaseResearch #Biocuration #FAIR #Ontologies #Bioinformatics

[J. Allen Baron @jabaron_phd]

Come find me if you’re there!

Representing @diseaseontology at #TAGC24

[Disease Ontology @diseaseontology]

The #DOTeam is looking forward to presenting at The Allied Genetics Conference. We're looking forward to seeing everyone! 🧬

@GeneticsGSA #TAGC2024 #Biocuration #FAIR #Bioinformatics #DiseaseResearch

[J. Allen Baron @jabaron_phd]

I knew there was a way to link relational databases and triple stores. I wonder if this is something that could be used to expand accessibility to relational data connected to @diseaseontology?

[Adrian Gschwend @linkedktk]

Just published: How we queried a billion observations with SPARQL using Ontop & DuckDB. A game-changer for RDF and large-scale data! 🚀
#sparql #rdf #Ontop #DuckDB #BigData #SemanticWeb

https://t.co/7INmkGVGvO

[J. Allen Baron @jabaron_phd]

@kidehen @diseaseontology @LearningSPARQL Oh, I misread that. The ontology doesn't include instances in the data.

[J. Allen Baron @jabaron_phd]

@kidehen @diseaseontology @LearningSPARQL The query was a simple example that included only disease IRIs and labels. I'd be happy to provide another one with more detail, given some guidance on what might be included.

Examples can be found at https://t.co/1r6Vxp7cN3

[J. Allen Baron @jabaron_phd]

@kidehen @diseaseontology @LearningSPARQL Not yet. The SPARQL endpoint was released < 2 wks ago. Documentation will follow soon.

[J. Allen Baron @jabaron_phd]

@kidehen @diseaseontology @LearningSPARQL You mean:
https://t.co/dYZFRhOVAw