Jiarui Ding

Asst. Professor of @UBC_CS | Computational biology, machine learning, single-cell multi-omics, cancer, food allergy, immunity | Alumni @broadinstitute

[Jiarui Ding @jiarui_ding]

ScPhere (w/ Aviv Regev @broadinstitute @MITBiology @kochinstitute @HHMINEWS, now @genentech) was published @NatureComms https://t.co/JfgGVl9Hal. ScPhere (pronounced “sphere”, Aviv coined this word & pronunciation) embeds cells into non-Euclidean spaces and addresses batch effects

[Jiarui Ding @jiarui_ding]

#DearMyCat Anna ding.

[Jiarui Ding @jiarui_ding]

In bioinformatics, simplicity is good

[Karthik Shekhar @shekharlab]

The retina contains numerous cell types. To what extent are retinal cell types conserved across species that greatly differ in visual needs? Our new preprint attempts to shed light on this question by integrating single-cell transcriptomic data from 17 vertebrate species.

[Jiarui Ding @jiarui_ding]

@jacksonweir4 @AndyRusss @Naeemnadaff @macosko @insitubiology Congratulations, also, thanks for the nice talk at SCGD! It seems that some count data from single-cell-portal are not available, e.g., in SCP2169.

[Oana Ursu (@[email protected]) @oana__ursu]

Paper alert! 🚨 Studying the mSWI/SNF chromatin remodeling complex, by single and combinatorial Perturb-seq and SHARE-seq!

Incredibly fun joint work with Jordan Otto Jagielski (her PhD thesis!) and @alexpywu, collab between Regev and @CKadoch labs! 1/n

https://t.co/n7iqCad1se

[Rahul Satija @satijalab]

Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day next Friday (4/7). All talks will be live-streamed (no registration required) at https://t.co/mkkGb2p91d

[Rahul Satija @satijalab]

Our webinar to introduce and release Seurat v5 is tomorrow at 12PM ET! Sign up to learn more about new methods for spatial, multimodal, and highly scalable analysis.

[UBC Computer Science @UBC_CS]

Dr. Jiarui Ding and co-authors publish their findings on central nervous system injuries, providing an atlas of mouse retinal cells after injury
Read: https://t.co/wnX5P8BHJR
#UBC #ComputationalBiology #ComputerScience @ubcscience @NatImmunol @jiarui_ding

[Jiarui Ding @jiarui_ding]

@UBC_CS @ubcscience @NatImmunol Thank you so much for highlighting our study!

[Nature Immunology @NatImmunol]

Aviv Regev and colleagues provide an atlas of the response of the adult mouse retina to optic nerve injury. Read it here: https://t.co/6gii0Mha4u

https://t.co/QCablMIWoQ

[InbalB @b_inbal]

Now out in @NatImmunol: https://t.co/Avxgv9XDyp and perusable on the @SingleCellBroad (SCP1785)

[Jiarui Ding @jiarui_ding]

Excited to see the online version https://t.co/IIvvQmXuGQ @NatImmunol

[InbalB @b_inbal]

Excited to share our preprint exploring post-injury tissue-level dynamics in the injured mammalian central nervous system, a great collaboration with @jiarui_ding, #AvivRegev, #JoshuaSanes and others (see below)! https://t.co/NTl6rOTjU0

[Jiarui Ding @jiarui_ding]

@TuXinming @genentech @_romain_lopez_ Congrats, couldn’t be better!

[Carl de Boer @CarldeBoerPhD]

Like prototyping? Genomics? Proof-of-concepts? Tech dev? Apply to this posting for a Research Assistant/Technician position in my group! The seniority of the position is flexible for the right person, so don't be shy if you feel over/under qualified. https://t.co/yiqLl5CNKu

[Jiarui Ding @jiarui_ding]

@saima_lab Congrats, Sai!!

[Jiarui Ding @jiarui_ding]

@kieranrcampbell @UBC_CS Thank you, Kieran!

[Jiarui Ding @jiarui_ding]

Thank you! So excited to receive the first grant after joining @UBC_CS!

[Science in Vancouver @ScienceVancity]

Congratulations to Dr. @Jiarui_Ding at @UBC_CS on receiving @NSERC_CRSNG funding to uncover the latent structure in #SingleCell multi-#omics data! 🔬

See which other Vancouver researchers received awards in December. 👇
https://t.co/XjcmFbSuoO

[Jiarui Ding @jiarui_ding]

@eli_mereu @UBC_CS Thank you, Elisabetta!

[Jiarui Ding @jiarui_ding]

@eli_mereu Congratulations :)

[Jiarui Ding @jiarui_ding]

Benchmarking studies are badly needed in rapidly growing fields

[Joshua Levin @jzlevin]

Nice Tech Feature article. Which single-cell analysis tool is best? Scientists offer advice https://t.co/Xq1PDGihh0
Thanks to collaborators @seankenneths @jiarui_ding @xadiconis @hoheyn

[Jiarui Ding @jiarui_ding]

This is huge - will play with the data :)

[Sohrab Shah @SohrabShah]

Very proud and excited to see this study published today with @DmitriyZamarin and @TeamOvary_MSK
https://t.co/sk8hvLuN6X @Nature with N&V summarizing the study here by Drs. Denarda Dangaj Laniti and George Coukos: https://t.co/ZHc5HGWaEY