Joseph Nesme

Environmental microbial ecology, antibiotic resistance & microbial adaptation. HGT are hot!

[Joseph Nesme @jnesme]

Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes? https://t.co/pwkjZb3TtG

[Jan-Ulrich Kreft @kreftj]

Out in final form: "Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning" in @iscb journal Bioinformatics https://t.co/O2k63DULHD (now fully open access)

[Joseph Nesme @jnesme]

@OlgaAnczukow @PacBio @jacksonlab @Magdoll @JBibliowicz76 @LEGO_Group I have no building steps leaflet in my box 😭

[bioRxiv Microbiology @biorxiv_micrbio]

The role of plasmids in the gut microbiome during the first year of life https://t.co/Vo0T8sx1ZP #biorxiv_micrbio

[PacBio @PacBio]

Copenhagen - the PacBio Discoveries Roadshow is back. Come along and hear our customers sharing their latest breakthroughs, and network with leading scientists on your doorstep.

View full agenda: https://t.co/M0JAaD7fj3

[Nicolas Tromas @NTromas]

For all Cyano lovers and/or those who have children (4-9yo) or a good connection with schools, here is the English version of Fila&Bubbee! We deliver it for free to schools and we also respond to children's questions by visioconference with schools.

[Javier DelaFuente @DelaFuente_Jav]

Very happy to see this work finally published! Many thanks to all authors, my lab mates and special thanks to @AlvSanMillan !

The full paper can be read here --> https://t.co/IdFJqDvB0x

If you want to know about it keep scrolling down! (1/5)

[Joseph Nesme @jnesme]

@UliKluemper @DSWAP1 @biorxivpreprint Aaaaaaah! Enlightened I am now 😅

[Joseph Nesme @jnesme]

@UliKluemper @DSWAP1 @biorxivpreprint I must miss the obvious, but there is no mention of epicPCR in the preprint? 🤔

[Urvish Trivedi @txurv]

📣We have open PhD positions on the early life human gut microbiome & microbial interactions therein @microUCPH

🔥Exciting project on #metagenomics & #metabolomics
🤝 Great collaborators @COPSAC_com
✍️Application deadline: Nov 4, 2022
https://t.co/t13MwQlm7m

🙏Please retweet

[Joseph Nesme @jnesme]

our follow-up study on disposal of sewage biosolids: Influence of sewage sludge stabilization method on microbial community... https://t.co/rPsjixjvU1

[Joseph Nesme @jnesme]

@Metlab_DTU @chalmersuniv What are latent ARGs? Non functional and/or in unimportant saprophytes hosts ARGs?

[Julia Davis @JuliaDavisNews]

Life comes at you fast: pundits on Russian TV realize that their military is failing and their country is in trouble. They are starting to play the blame game. Some of them finally understand that their genocidal denial of the Ukrainian identity isn't working in Russia's favor.

[Doreen Babin @DoreenBabin]

Lettuce grown in soil with organic fertilization history had higher fitness in presence of pathogen Rh. solani compared to mineral fertilization yet showed growth/defense tradeoff. DiControl: @igz_leibniz @UniHohenheim @HSAnhalt @HelmholtzMunich @JKI_Bund @BonaRes4u @jnesme

[Kate Baker @ksbakes]

Why did one AMR plasmid disseminate globally and one die out? Find out inside this awesome work https://t.co/2V2q3ZkN5d led by @MalakaDeS with @Jaws_Stenhouse @GraceBlackwell @RJBengtsson @ClaireJenkins2 @JPJHall 1/8

[Joseph Nesme @jnesme]

@BioMickWatson 'cause all your regants bear the mention "For research use only, not diagnostic"- I am not an expert in that matter but the legal ramification must be crazy...

[fabienne.benz @FabBenz]

New preprint out!

We know that plasmid spread depends on the specific bacterial host. But are initial phenotypes of strain-plasmid pairs or evolutionary changes in their plasmid-stability traits the more relevant predictor of plasmid spread? 1/3

[Fernando Rabanal @malacopa_genome]

Latest #preprint at @PlantEvolution lab: we fully exploit pool-based amplicon sequencing with @PacBio long-reads to preserve the haplotype information of the targeted locus.

Lead by @Kersten_Sonja in collaboration with @agris42 @zevkronenberg @kjschmid

https://t.co/vmZRSX2Y0j

[Christian Kost @KostChristian]

A fully funded PhD position is available in my lab:
- 3 years
- project: metabolic and regulatory drivers of metabolic cross-feeding interactions in microbial communities
- deadline: 28.07.22
- experience in LC-MS analyses and/or transcriptomics is a plus

https://t.co/oKnrrykNLf

[Joseph Nesme @jnesme]

@tomodelmont What's microdiversity? Pun intended.

[Joseph Nesme @jnesme]

@epcrocha @IbeidLabex @FRM_officiel Excellent as usual! Though fwiw it is a bit RefSeq plasmid is not a random sampling of plasmid sequence diversity. We are trying to change this @microUCPH with massive sequencing of envt. plasmids and novel methods to assemble & bin these from short reads @simonrasmu @CeBiTec