Eugene Katrukha 🇺🇦

biophysics, cytoskeleton and self-disorganization

[Eugene Katrukha 🇺🇦 @katpyxa]

I decided to move to the 450nm atmospheric website, look for me there.

[Vladimir Volkov 🇺🇦 @microtubule_guy]

What is the difference between a growing and shortening microtubule end? I thought I knew the answer until I started talking to @maxotubule and @KalutskiyMaksim. Turns out the key are protofilament clusters - check out our preprint for details https://t.co/7tAhmcXCnX

[Beth Cimini Lab 🔬💻 📊 @CiminiLab]

Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis https://t.co/JXKlKSUjK9

[Journal of Cell Biology @JCellBiol]

.@yuhao_han, Grünewald, @MarinaMikhaylo8 @HumboldtUni et al. use primary hippocampal cultures to demonstrate that neurons with axon-carrying–dendrite (AcD) morphology can develop independent of an in vivo environment. https://t.co/cJr8duzMuv

@christlet #Neuroscience #Polarity

[𝙲𝚞𝚛𝚝𝚒𝚜 𝚁𝚞𝚎𝚍𝚎𝚗 (@[email protected]) @ctrueden]

@christlet @ArrateMunoz @guijacquemet Pre-release bundles available at https://t.co/9cZu3BbU8d – still working on fixing a few things, which is why I haven't pushed the option to update to all Fiji users yet.

[Beth Cimini 🔬💻 📊 @BoSoxBioBeth]

Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysistools or find your next fav! https://t.co/yGD3jvC7e3

Please also help our community improve by filling out our survey - https://t.co/xgGGgh8LA4

[Eugene Katrukha 🇺🇦 @katpyxa]

Impressive talk about 'behind the scene' of full fly brain reconstruction from @sdorkenw #I2K2024

[Eugene Katrukha 🇺🇦 @katpyxa]

@HenriquesLab @gomez_mariscal @Bruno_MSaraiva @IvanHCenalmor Get well, it is most important!

[Lucien Hinderling @lhinderling]

yes, i do public engagement (lost my poster in the train)

[Eugene Katrukha 🇺🇦 @katpyxa]

@lhinderling I laughed, since that happened to me a couple of times. I hope you are not down, the main point is that you hopefully will arrive ok. And now you can show a presentation with movies instead of a boring 2D sketch.☺️

[Eugene Katrukha 🇺🇦 @katpyxa]

@lhinderling Interdisciplinary collaborations incoming!

[janhansen @jn_hansen]

How diverse is protein localization to human primary cilia? Check our study revealing incredible cell-type and single-cell diversity:
https://t.co/akSPSfvDdv
3 year effort of studying 1935 proteins with imaging - 654 ciliary proteins pictured!
Tweetorial by @Prof_Lundberg & ⬇️

[Google AI @GoogleAI]

Announcing CT Foundation, a new medical imaging embedding tool that accepts a computed tomography (CT) volume as input and returns a small, information-rich numerical embedding that can be used to rapidly train models. Learn more and try it out yourself → https://t.co/AFXAj5edTE

[Oane Gros @GrosOane]

Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! 🔬🎉

https://t.co/EvfBo77PKK

[Loïc A. Royer 💻🔬⚗️ @loicaroyer]

🚀 Thrilled to announce #inTRACKtive: a web-based tool for exploring massive cell-tracking datasets, no software installation required! Just open your browser and dive into terabytes of developmental biology data. We used it to build the virtual https://t.co/ZpTn6MvKtF of tracked embryonic development datasets 🐭🪰🪱🪲🐠, but you can also use it for your own data! 🔬

Preprint:
https://t.co/AGUek2Adom

Repository:
https://t.co/FWT0xixJmv

This project was spear-headed by @TeunHuijben, together with engineers Andrew Sweet and @aganders3 from @cziscience

@czbbiohub #CZBiohubSF #devbio #tracking #web #visualization

🧵1/n

[Loïc A. Royer 💻🔬⚗️ @loicaroyer]

2/ 🐠 Zebrahub-Multiome offers interactive data exploration via CZ #CellxGene and interactive figures powered by #Streamlit. Dive into the time-resolved and cell-type-specific complexities of chromatin accessibility and gene regulatory networks during zebrafish embryogenesis with unprecedented detail!

https://t.co/qgBijTQgq9

#zebrahub #grn #devbio

[Eugene Katrukha 🇺🇦 @katpyxa]

Very pretty! And looks like just right dataset for #BigTrace analysis and visualization

[Eugene Katrukha 🇺🇦 @katpyxa]

@christlet @bio_physics No. Good addition, thank you. I saw the paper, but I was not convinced by the results shown in figures.

[Eugene Katrukha 🇺🇦 @katpyxa]

@bio_physics Ok, here is the last one :) Similar idea to Fourier space decomposition, only they use pre-trained networks to separate orientations and link back https://t.co/cuwlVZ4Kmn

[Eugene Katrukha 🇺🇦 @katpyxa]

@bio_physics there is also this tool (matlab) that focuses on resolving intersections accurately https://t.co/FOFpZPllFE

[Eugene Katrukha 🇺🇦 @katpyxa]

@bio_physics And there is also TSOAX/SOAX 2D/3D +T, but in C, standalone https://t.co/1pv7toFJNm