LNCipedia.org

is an integrated database of 113,513 human annotated lncRNA transcripts obtained from different sources. Tweets by @pjvolders

[Pieter-Jan Volders @pjvolders]

Hi non-coding RNA twitter! I am guest editing a special issue for @Non_Coding_RNA titled “Advances in Non-coding RNA Databases and Resources”.
Submission deadline is 20 January 2022.
https://t.co/nokl5AdpSK

[Marta Melé @marta_mele_m]

please RT: Postdoc position in Barcelona! Interested in transcriptional regulation, bioinformatics, population genetics? Join us https://t.co/kWyJShQ1vQ
@Alfons_Valencia
@mirimiam
@CRGenomica
@nlbigas
@maralbasoler
@hoheyn
@AidaAndres
@GOLDLab_Bern
@anaconesa
@anaklaudiam

[LNCipedia.org @lncipedia]

Happy #RNAday !

[Pieter-Jan Volders @pjvolders]

Working on circRNA? Check out our latest (and @MariekeVromman ’s first) paper on the good, bad and ugly of circRNA annotation. Bottomline: proceed with caution!👇

[Marta Melé @marta_mele_m]

Interested in transcriptional regulation, computational biology, single-cell transcriptomics? Come and join our team! https://t.co/kWyJShQ1vQ

[LNCipedia.org @lncipedia]

Interested in doing a PhD on non-coding RNAs? Our lab is looking for a PhD candidate to do research on circular RNAs in cancer. Join the home of LNCipedia in the beautiful city of Ghent, Belgium! https://t.co/4FkrFaup8i

[Marta Melé @marta_mele_m]

please RT: Very excited to open a postdoc position in transcriptomics in my new lab at BSC in Barcelona!! https://t.co/eCF9kx8RLb
@Alfons_Valencia @Noncodarnia @PardisSabeti @tuuliel @ewanbirney @tmarquesbonet @mirimiam @BSC_CNS @IRBBarcelona @CRGenomica @nlbigas @maralbasoler

[Dr. Kaia Mattioli @kaia_mattioli]

our work on trying to understand the tissue-specificity of lncRNAs is out!! we performed an MPRA to analyze endogenous core promoter activities across lncRNAs, mRNAs, and eRNAs in 3 diverse human cell lines & find that sometimes, specificity is associated with TF motif simplicity

[Pieter Mestdagh @pieter_mestdagh]

Our review on lncRNA expression profiling in cancer out now in Genes, Chromosomes and Cancer https://t.co/v3Vsss0bDf.
By Lucia Lorenzi, @Frank_Txu, @celine_everaert, @pjvolders, @hHetty, @jvdesomp and others in the lab.

[LNCipedia.org @lncipedia]

LNCipedia 5 paper is out! Includes literature curation of 2482 lncRNA articles. Most lncRNA papers are focussed on a small set of genes though…
https://t.co/GkbrYaCsmF

[RNAcentral @RNAcentral]

RNAcentral release 10 includes comprehensive genome mapping for 250+ species, GO annotations from @rachhuntley1 and @UCLgene team, new data from @mirbase, @lncipedia, @FlyBaseDotOrg, and more! Check out the details on the blog: https://t.co/SScMpELGBB

[LNCipedia.org @lncipedia]

@gertvanpeer @pjvolders Sounds like a great side project!

[LNCipedia.org @lncipedia]

LNCipedia 5.2 had just been released to resolve some issues with the naming schema in LNCipedia 5.1.

[LNCipedia.org @lncipedia]

Several users notified us of inconsistencies with the names of lncRNAs in LNCipedia 5.1. We are currently working on a solution and will release an update shortly.

[LNCipedia.org @lncipedia]

Happy #RNADay everyone!

[LNCipedia.org @lncipedia]

LNCipedia 5.1 was released this week with support for Sequence Ontology terms. A custom pipeline classifies all genes and transcripts based on their orientation to protein coding genes.

[Fabrice Leclerc @rnomics]

Top #tweeted #RNA list story: @lncipedia: 'Literature annotation increased to 2435 papers in LNCipedia 5.1. Providing functional annotation for 1555 #lncRNA genes! ', see more https://t.co/QRe3vIMZc3

[LNCipedia.org @lncipedia]

Literature annotation increased to 2435 papers in LNCipedia 5.1. Providing functional annotation for 1555 #lncRNA genes!

[LNCipedia.org @lncipedia]

LNCipedia 5.1 is out! Improved filtering and annotation and a new responsive design based on #bootstrap. #lncRNA

[LNCipedia.org @lncipedia]

@GOLDLab_Bern @NatureRevGenet Great work! It would be interesting to see how LNCipedia compares with the other resources in your paper, did you by any chance do those analyses?