Malte Thodberg

Postdoc, University of Copenhagen

[Danish Diabetes and Endocrine Academy @DDEA_Denmark]

DDEA MULTI-MILLION GRANT ALLOCATION
The DDEA is happy to announce the first 16 DDEA grant recipients
👉 THE 16 GRANT RECIPIENTS CAN BE FOUND HERE: https://t.co/dyGRbRyGn4
👉 THE PRESS RELEASE: https://t.co/nt7TylGqLy
#DDEA #Grants #PhD #Postdoc #VisitingProfessor

[Malte Thodberg @maltethodberg]

@saorisakaue Would be super interesting with a preprint for this!

[Kim Jensen @kim_bak_jensen]

Very proud to see this published.
https://t.co/IMhK474xL1
A big shout out to past and present members of my incredible team @JensenLab_UCPH. Congratulations Pawel Schweiger, Marie Le Bouteiller, @maltethodberg, Shiro Yui and Ditte Clement.

[Malte Thodberg @maltethodberg]

@masakanai @mitja_kurki @qbw_128 @francoisaguet @KArdlie @bennerstat @Kazu_Ishigaki @saorisakaue @ReillyLikesIt @APalotie @bmneale @r_tewhey @PardisSabeti Super interesting! Did you also look at using PAINTOR for trans-ancestry finemapping?

[Malte Thodberg @maltethodberg]

Super excited to start a two-year postdoc funded by the #danishdiabetesacademy together with Torben Hansen at @Metabolcenter and @ceclindgren as international collaborator!

[NNF Center for Basic Metabolic Research (CBMR) @Metabolcenter]

Congratulations to Malte Thodberg, @rikke_nielsen and Nicholas M. Morton who have all received grants from the @DDA_Denmark to carry out research at CBMR.

Learn more about their projects, below 👇

https://t.co/iPebcJbTZw

[Malte Thodberg @maltethodberg]

@ZLinSLU @SLUBiology @SLUResearch @NSF_BIO @evol_genomics Very interesting preprint! You might also be interested in a fission yeast CAGE paper we did recently https://t.co/v8vr5X99I3. We also looked at TATA-box motifs and broad/sharp TSS clusters. Happy to discuss!

[Albin Sandelin @albin_san]

Finally out. Nice collaboration with Axel Thieffry and Peter Brodersen. We show a possible reason for why PROMPTS are not common in plant genomes. Also interesting exosome-sensitive lncRNAs antisense to genes. https://t.co/9i5SiqR1qC

[Albin Sandelin @albin_san]

2-year postdoc in cancer bioinformatics in my group. Please spread to great candidates. https://t.co/b6QbsZPGqL

[Kristoffer Vitting-Seerup @KVittingSeerup]

Finally nailed down the strange batch effect on PC2... FFS. #Bioinformatics #RNAseq #transcriptomics #SingleCell

[Albin Sandelin @albin_san]

Our preprint on bidirectional transcription and RNAs subject to nuclear decay enzymes in Arabidopsis https://t.co/dPB5YQPU27

[RNA-Seq Blog @RNASeqBlog]

Researchers from @uni_copenhagen present CAGEfightR, a framework for analysis of CAGE and other 5′-end data implemented as an R/Bioconductor-package. https://t.co/rt1eVLpXjH

[Albin Sandelin @albin_san]

Our R package for analysis of 5' seq data (CAGE and other methods) is now published in BMC Bioinformatics https://t.co/yf4jgpcIyS

[Malte Thodberg @maltethodberg]

How do you use it? We also have a comprehensive workflow with example code showing how to use CAGEfightR in practice: https://t.co/HxzsMc8DJU. This includes using CAGEfightR with popular differential expression tools such as DESeq2, edgeR and limma.

[Malte Thodberg @maltethodberg]

The paper for the CAGEfightR R/Bioconductor package is out in BMC Bioinformatics https://t.co/4f5zcjQr94! CAGEfightR makes it easy to analyze your 5’-end data (CAGE, PRO-Cap, etc) #rstats #Bioconductor

[Malte Thodberg @maltethodberg]

You can get CAGEfightR via Bioconductor https://t.co/Jj7MdVg1C8

[Erik Arner @erikarner]

I will be taking up a visiting professorship at Hiroshima University in the near future, opening a second, purely computational bioinformatics lab. Looking for talented postdocs – spread the word!
https://t.co/MFgNl6mRsF

[Piero Carninci @carninci]

At the beginning of the millennium, others and us identified many lncRNAs. New exciting biological paradigms emerge from analysis of functional lncRNAs only when we can know their functions.
In the #FANTOM6 pilot project we tested functions of 285 lncRNAs
https://t.co/xoDHiRafUM

[Malte Thodberg @maltethodberg]

Two postdoc positions available in the Hematogenomics group at Lund University, one computational (https://t.co/dHg3DBOEqA) and one experimental (https://t.co/XwQj7nnbCJ), both on the exciting BloodVariome project!

[Luigi Marchionni @marchionniLab]

Characterizing lncRNA function is key to further our understanding of gene regulation and cell biology. See: Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping With ⁦⁦@carninci⁩ ⁦@difersanchez⁩ ⁦@eddieimada⁩ https://t.co/k7tGyB1RYO