micro-manager

Micro-Manager ( is open source software for microscope control. It is used by thousands of research laboratories world-wide.

[micro-manager @manager_micro]

Instant molecular orientation imaging using a Thorlabs camera and Micro-Manager: https://t.co/RSkfNZD0mV

[micro-manager @manager_micro]

Neat microscope auto-focus system that works with Micro-Manager: https://t.co/MZXlT7sSyF

[Alfred Millett-Sikking @amsikking]

Microscope objectives can be confusing, and detailed specs (or even basic properties) are often hard to find. Here's an introductory resource to help new builders and instrument designers with the basics. It's a work in progress so feedback is appreciated:
https://t.co/e93FDoGvtq

[micro-manager @manager_micro]

@TanFad @Micromede @NikonInst @nico_stuurman Since last January there is a NIDAQ device adapter for analog and digital output control. Still no waveforms, that is next on the list (but waiting a bit to fully understand the requirements).

[Lucien Hinderling @lhinderling]

Real-time segmentation of fibroblasts allows us to grow actin skeleton in a specified direction! Cells built @Pertzlab express optogenetic construct to activate RAC. We use @manager_micro and @napari_imaging to train a pixel classifier for segmentation on live data from scope. 🧵

[micro-manager @manager_micro]

@vmdraviam Post your questions on https://t.co/GDLRCKAIKa, tag with "micro-ma nager"

[micro-manager @manager_micro]

An Acquisition and Training Module based on @manager_micro for straightforward transformation of basic fluorescence microscopes into experimental cell mechanics rigs: https://t.co/p6a6OSMtJX

[Gregory Batt @gregory_batt]

Our MicroMator paper on software to support reactive microscopy is published in @NatureComms.
https://t.co/Q4Dn3y3BeV
Big thanks to @zachrfox, @twitoSebas, @BertauxFrancois and others at @Inria and @institutpasteur.

[micro-manager @manager_micro]

Thanks to Mark Tsuchida you can now install Micro-Manager Python bindings using:

conda install -c conda-forge pymmcore

[Jon Daniels @jsdaniel02]

Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC @Bin_YANG_Optics @DougPShepherd @kschink @MarijnSiemons @Maurice_Y_Lee @mattersOfLight @openspim

[Talley Lambert @TalleyJLambert]

napari-micromanager is coming along thanks to amazing work from @FedeGasparoli (& help from @ianhi7919!).

w/ working @manager_micro property browser, illumination and ROI control, and a multi-D acquisition widget... all python and C++ with pymmcore 🎉

https://t.co/DLRxZh0ggG

[micro-manager @manager_micro]

@aandr314 Not sure how you landed on that link, but https://t.co/B9UR2q8TlR links to https://t.co/lZPPE3aFRq and that resolves nicely.

[micro-manager @manager_micro]

And @TalleyJLambert's and co-workers @napari_imaging @manager_micro plugin using pymmcore directly

[Talley Lambert @TalleyJLambert]

@lhinderling @napari_imaging @manager_micro very cool @lhinderling ... we're also working on a napari mircromanager plugin here https://t.co/DLRxZgIFp8

would love to get your input/thoughts

[micro-manager @manager_micro]

A cool looking @napari_imaging interface to @manager_micro using pycro-manager:

[Lucien Hinderling @lhinderling]

🔬Live-view, channel switching and exposure control in @napari_imaging! Using @manager_micro as backend. Took some tweaking to get stable framerates, but feels snappy now ⚡️

[Nico Stuurman @nico_stuurman]

Fresh on the heels of Micro-Manager 2.0, we are happy to announce a completely revamped @manager_micro website at https://t.co/jWNZdokh39. Great work by the @EliceiriK group, you will recognize elements of the imagej net design.

[Nature Methods @naturemethods]

Out today! Pycro-Manager: open-source software for customized and reproducible microscope control.
https://t.co/ochkf7djr2