Marek Kokot

[Sebastian Deorowicz @sdeorowicz]

Recently, our SPLASH paper (https://t.co/Ck7513HE2t) was published in NatBiotech. Now, we release its extended version, sc-SPLASH (https://t.co/quD6Mc83Mc), which allows reference-free analysis of single-cell data. It was a great experience to work with our collaborators on that!

[Sebastian Deorowicz @sdeorowicz]

NOMAD2 is an unsupervised, reference-free, ultra-fast next generation of NOMAD, revealing new insights into cancer transcriptomes. Joint work with @salzmanlab. Many thanks to all for great collab!
https://t.co/x25YvXXhdh

[𝕐 @nomad421]

Recently the paper describing Cuttlefish 2 (led by @scarecrow00007 and in collaboration with @marekkoki and @sdeorowicz) was published in @GenomeBiology (https://t.co/RFvxS60LbU). We're quite excited about Cuttlefish 2 and what it enables. (short 🧵) 1/

[Yoann Dufresne @yoann_dufresne]

In this new Bioinformatics Application Note, we introduce a file format named KFF for efficiently storing kmers on disk.
https://t.co/20gTzasFuD

[𝕐 @nomad421]

After quite a bit of CMake and clang-related work by @scarecrow00007, the cuttlefish 2 functionality has been stabilized on the main branch, and the cuttlefish 2 release has been tagged (https://t.co/CuK7TRHy8q)! It's also available on bioconda (linux/OSX). Feedback welcome!

[Sebastian Deorowicz @sdeorowicz]

A gift for holidays from the KMC team - new release (v.3.2) of our k-mer counter is ready for download from https://t.co/dK2pOCMpG8
Novelties: KFF format support, fast histogram estimation, KMC lib (easy integration in C++ apps) and more.