Muzaffer Arikan

asst. prof. @istanbuledutr | exploring microbiomes through single- and multi-omics analyses

[Evgenii Protasov @protasov_evgeni]

An eco-evolutionary theory of host-associated microbiomes
#microbiology #microbiomes #evolution
@PNASNews
https://t.co/AMfOT8M7VL

[Muzaffer Arikan @muzaffer_arkn]

MetaproDB:
A Flexible and Reproducible Framework for
Biome-Informed Protein Sequence Database Construction for Metaproteomics https://t.co/MSl3sBY4oT

[Muzaffer Arikan @muzaffer_arkn]

Our new article has been published in Scientific Data. We present DAMPC, dual activity microbial peptides catalog:
https://t.co/24T2lqF7Qv

[Muzaffer Arikan @muzaffer_arkn]

DDT exposure drives time-dependent restructuring of soil microbiomes in urban garden microcosms: https://t.co/Y53xoZEw0W

[Muzaffer Arikan @muzaffer_arkn]

Our article has been published today in @PeerJSTM https://t.co/k3I1qN2fFZ #Bioinformatics #EcosystemScience #Microbiology #Oncology

[Bahtiyar Yilmaz @bahti_yil]

🚨 New paper out in Cell Host & Microbe!
We built the first global atlas of mouse microbiome diversity across 51 vivaria and 12 wild colonies 🌍🐭
https://t.co/onoPv2OZsd

[bioRxiv Bioinfo @biorxiv_bioinfo]

MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes https://t.co/9h6OBkoURK #biorxiv_bioinfo

[patrick veiga @veiga_pat]

Thrilled to share our latest review on how the gut microbiome connects diet to health, now published in Nature Reviews Gastro & Hepatology! Honored to co-sign this piece with outstanding PIs @EranElinav @YolandaSanz_Lab @jfcryan @m_dch @INRAE_France @MgpsLab

[Eric Topol @EricTopol]

Two important papers on the gut microbiome and disease
—The fecal microbial load is a key determinant confounding prior reports of association with diseases
https://t.co/BcCkMnB9Ht @CellCellPress @embl
—Innovative approaches to establish causality and mechanisms
https://t.co/xhDQtx2flI
@ScienceMagazine

[Science Magazine @ScienceMagazine]

In the 20 years since the term “microplastics” was first coined, a rapidly growing body of research has consistently shown how pervasive and problematic the pollutants have become.

A new #ScienceReview provides an overview of this research and the progress made in understanding #microplastics. https://t.co/QqcqlwEaZx

[Muzaffer Arikan @muzaffer_arkn]

Construction of Protein Sequence Databases for Metaproteomics: A Review of the Current Tools and Databases | Journal of Proteome Research https://t.co/dsduBY91oG

[Danilo Ercolini @DaniloErcolini]

A milestone in Food Science - Unprecedented food microbial diversity of 2,500 metagenomes published in Cell. Huge accessible database of genomes to study food microbes! Hard work with @nsegata @epasolli @pauldcotter and many @MASTER_IA_H2020 partners!
https://t.co/XNMvBz0Ygv

[Paul Cotter @pauldcotter]

Are you what you eat? Biggest-ever catalogue of food microbes finds out https://t.co/tU8joRJT51

[Muzaffer Arikan @muzaffer_arkn]

gNOMO2, our bioinformatic pipeline for integrated multi-omics analyses of microbiomes, has now been published! If you are using multi-omics in your microbiome study, give it a try!
https://t.co/TbEuMILTFF

[Mizrahi Lab @LabMizrahi]

🚀Delighted to announce our recent publication in @ScienceMagazine! We've unveiled novel Ruminococcal species🦠in the human gut, proficient in cellulose degradation🌾and finely tuned to our evolutionary journey.🔬Dive into the key findings with us. (1/9)
https://t.co/kHZ1c3E8Rl

[Cees Dekker @cees_dekker]

I’m thrilled to be able to announce that we were granted a NWO Summit grant entitled ‘Evolving Life from Nonlife’ (EVOLF) with 40 million euro for a 10-year project aimed to cross the gap between non-life and life by assembling a living synthetic cell from lifeless biomolecules!

[Sistem Biyolojisi ve Biyoinformatik Derneği @SbBiyoinfo]

7nci Akademik İş birliği Toplantımız Bezmialem Ünv. Biyoteknoloji Enstitüsü (Beykoz)'da, 1 Haziran Cumartesi günü gerçekleştirecektir.
Onur Emre Onat, @muzaffer_arkn,
Elif KUBAT OKTEM, @karabekmezPhD ve Şeref Gül hocalarımızın sunumları ile...
Kayıt:
https://t.co/iWYj5zgqr6

[Jim Shaw @jim_elevator]

We (me and @YunWilliamYu) built a fast coverage calculator for *multi-sample metagenomic binning* called fairy.

Available on github (https://t.co/JN4a0bHwVH) and as a short paper on bioRxiv:

https://t.co/PrGLy8LOlT

1/5

[Zamin Iqbal @ZaminIqbal]

First step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset)
https://t.co/RLQiUBZJNk

[Itai Yanai @ItaiYanai]

How did we lose our tail? A simple question.. but it wasn't really asked before! We discovered a plausible scenario for the genetic mechanism that led to tail loss. Amazing that such a big change may have been caused by such a small genetic event. https://t.co/0ZR8aH23PJ @BoXia7