Newt Pathway Editor

[iVis@Bilkent @iVisAtBilkent]

First publication on a rather mature pathway editor @newteditor. Congrats to all who contributed including @balcihasannn @AlexanderMazein @ozgunbabur @emekdemir @ugurdogrusoz2 @sbgnnews https://t.co/UEdyJ7r22u

[iVis@Bilkent @iVisAtBilkent]

@Guruji_Panks will be working on providing local database support for SBGN maps in @newteditor
this summer as part of @gsoc supervised by
@ugurdogrusoz2 @sbgnnews @neo4j

[iVis@Bilkent @iVisAtBilkent]

@Can__alpay will be working on automatic conversion of SBGN PD maps to AF maps for @newteditor this summer as part of @gsoc supervised by @AlexanderMazein @sbgnnews

[Cytoscape @cytoscape]

Student application period for GSoC 2021 ends on April 13! Cytoscape is participating as part of https://t.co/CKNGR0osJf.
Join us this summer to work on #opensource #openscience #netbio projects.

https://t.co/8izYDyS4TF

[iVis@Bilkent @iVisAtBilkent]

Newt tutorial starting in half an hour @ Combine 2020 @newteditor @sbgnnews Join via https://t.co/KSbmvwMjpU

[SBGN @sbgnnews]

A new version of the file format SBGNML for the graphical representation of biological networks is now available at https://t.co/r2oqIlJa1B @DeGruyterOA

[COVID-19 Pathways @CovidPathways]

5th Disease Maps Community Meeting. 12-14 November 2020
The 2020 community meeting is dedicated to the COVID-19 Disease Map project and is organised as a web conference. https://t.co/UDrwRcrXYE (more info soon)

[COVID-19 Pathways @CovidPathways]

The @CovidPathways project also connects content from many involved resources. Here is the conversion scheme that we are working on:

[iVis@Bilkent @iVisAtBilkent]

A modified version of a Covid-19 pathway produced by the ongoing COVID-19 Disease Map project @CovidPathways and converted into SBGNML by @canninl as displayed in editable form in @newteditor https://t.co/uZdc44dVHX

[iVis@Bilkent @iVisAtBilkent]

Newt was updated to include some new exciting features including experiment data overlay. Check it out at https://t.co/FJ8ZTYVyAM. @sbgnnews @CS_Bilkent

[iVis@Bilkent @iVisAtBilkent]

A library and service for bidirectional conversion between CellDesigner and SBGN formats #sbgn #celldesigner @newteditor @sbgnnews @CS_bilkent https://t.co/DreiONqIVq

[Alexander Pico @xanderpico]

New repo sharing our ongoing CC0 work to extract pathway knowledge from published figures and its intersection with #COVID2019 articles collected in the #CORD19 dataset by @allen_ai w/@nlm_news, @cziscience, et al. 4841 genes in 223 pathway figures so far! https://t.co/JX3H2VQSZa

[Pathway Commons @PathwayCommons]

Version 12 of Pathway Commons is online! Over 5 700 pathways, 2.4 million interactions from 22 sources. #pathways https://t.co/GGtXn4wBcw

[iVis@Bilkent @iVisAtBilkent]

Check out basics of our web based pathway editor Newt 2 in this tutorial: https://t.co/OFHNzxyUfh
#sbgn #sif #pathways #diseasemaps @newteditor @OHSUNews

[iVis@Bilkent @iVisAtBilkent]

Announcing Newt 2.0 with many exciting new features such as SBML and SIF view support, faster layout, semantic validation of PD maps, persisting user preferences, flexible infobox positioning and styling, map color schemes with background images https://t.co/L0ocjdTqDM

[reactome @reactome]

Check out our latest V70 data release! New pathways & reactions w/ new & updated proteins, small mols, drugs & literature citations. Fully integrated w/ #webservices, #PathwayBrowser & #graphdatabase. #dataviz #dataanalyisis #genomics #biology #opendata

[WikiPathways @WikiPathways]

September 2019 WikiPathways update: 905 edits by 15 contributors and 5 new pathways in the last month. Accessible via #webservices and in @PathVisio and @Cytoscape. https://t.co/Mc9WVPLE2N #bioinformatics #openscience #opensource

[Cytoscape.js @cytoscapejs]

Version 4.1.0 of cytoscape-cose-bilkent released on npm https://t.co/nkUkMCNCVd

[cBioPortal @cbioportal]

Thank you to all students and mentors who helped make @gsoc Google Summer of Code 2019 a success! We had 6 projects ranging from visualization prototypes (#clonalevolution #pathwaymapper @OncoKB), to data import pipelines (#CPTAC #GDC) and backend optimizations (#spark #parquet).

[Cytoscape.js @cytoscapejs]

Version 3.8.3 of cytoscape released on npm https://t.co/VpSnCT6xmB