Pierre-Paul Axisa

researcher at CRCT (Toulouse, France). immunogenetics, compbio, biostats, pun lover.

[Pierre-Paul Axisa @ppaxisa]

Great to see this out and participate in this effort

[Stefano Mangiola @steman_research]

🎉🧹 The #tidyomics ecosystem is official!

Into #omic data analysis? Spanning #Seurat @Bioconductor #SCE, #SE, #GRanges, #Citometry?
Now, just use #tidyverse !

Co-led with @mikelove and @TonyPapenfuss @WEHI_research #singlecell

The preprint https://t.co/jGEy2BVj5C

[OncoDaily @oncodaily]

Myeloma Paper of the Day, June 15th, suggested by @Myeloma_Doc
@RuchanEkren @LaLilli11 @PerrotAurore @ppaxisa @MartinetLudovi2
https://t.co/xRhS4PSEBv

#Myeloma #MyelomaPaperOfTheDay #Cancer #Oncology #OncoDaily

[Pierre-Paul Axisa @ppaxisa]

@iskander Thanks, I hadn’t grasp that major subtlety. Re normalization, I guess you also need to avoid normalization on the full data? You would run any preprocessing like scaling on train/test separately to avoid similar problems?

[Pierre-Paul Axisa @ppaxisa]

@mikelove Late to the party but I also have some codes to share for the blue place, happy to connect with interested people by DM. There is also an invite pool here from @micahgallen
https://t.co/KgU0RiLKZL

[Pierre-Paul Axisa @ppaxisa]

@mikelove Late to the party but I also have some codes to share for the blue place, happy to connect with interested people by DM. There is also an invite pool here from @micahgallen
https://t.co/KgU0RiLKZL

[Abdullah Al Nahid @abdnahid_]

I am thrilled to announce the release of my first R/Bioconductor package, "easylift."

This library simplifies the genomic liftover process, interfaces seamlessly with GRanges and UCSC chain files, and integrates with BiocFileCache.

https://t.co/YWEb6mmNYO

[Pierre-Paul Axisa @ppaxisa]

@tcarpenter216 Omg I feel your pain. I got introduced to broom as soon as I learnt R. I can’t imagine living without it!

[Amy Willis 😻 amydwillis.bsky.social @AmyDWillis]

It amazes me that "Statistical analysis" are single subsection of "Methods" appendices in #microbiome papers. Y'all have separate sections for "Sample storage" (with careful justification), "DNA extraction" (w/ careful justification), "qPCR" (w/ careful justification)... 1/6

[Pierre-Paul Axisa @ppaxisa]

@tcarpenter216 Looks like obi wan Kenobi has been there

[alex rubinsteyn @iskander]

Anyone else want invite codes for MLSky / ImmunoSky / MedSky / GeneSky?

(genomics & immunology pretty active over there, could use some cliques of machine learning / deep learning folks to busy up that feed)

[Pierre-Paul Axisa @ppaxisa]

@laurabronner @tcarpenter216 I think you can use the lubridate::dmy_hm function to easily specify the formatting

[Georgeta Vaidean @georgeta]

@statsepi Publication pressure ‘trickles down’ to academics, residents, med. students, HS . High pressure, hi volume/hi speed ‘academic’ environs grooming bad methods habits, ‘research’ becomes devalued & hollow word. How do we break the vicious circle of hype, noise and research waste?

[Pierre-Paul Axisa @ppaxisa]

@tcarpenter216 most of the time for me in R, I pull my hair for a few hours and then realize: IT'S A FACTOR! (when it should not be)

[Pierre-Paul Axisa @ppaxisa]

Maybe someone’s playing among us with academic colleagues and they all have imposter syndrome.

[Oded Rechavi @OdedRechavi]

If sitting in a seminar with an open laptop is considered polite then you should be able to bring a playstation to talks

[Pierre-Paul Axisa @ppaxisa]

@iskander @myphysicsvoyage @bluesky if you still have invites I'm interested!

[Pierre-Paul Axisa @ppaxisa]

@statsepi I was once in a department seminar where a colleague presented results from a clinical cohort, and went over sample swapping errors that we had to correct. After the talk a professor came to him and said to not do that again because that make us look sloppy

[Pierre-Paul Axisa @ppaxisa]

@Dreamer0fships Sorry if naive question: how advanced in your career do you need to be to apply to those kinds of position? I’m a postdoc.

[Pierre-Paul Axisa @ppaxisa]

every time I look for an illustration of my work in #Bioinformatics #rstats, I stumble on the mighty *laptop with double helix on screen*. Do people usually visualize all their NGS data as a double helix DNA, am I doing something wrong?

[Stefano Mangiola @steman_research]

#crowdresearch is awesome! Do you love #tidyverse and #omic' research?

There are 20+ open challenges still waiting for a champion. Join our effort, solve one (or many), and become part of our upcoming #publication!

https://t.co/hBjpoysOG4
#tidyomics @Bioconductor