Rasim Barutcu

Associate Director @ ScitoVation
Transcriptomics, Toxicogenomics, Risk Assessment, Chromosome Biology, Epigenetics, RNA Biology

[Rasim Barutcu @rassobar]

@pmelsted no more coffee break while mapping?

[Rasim Barutcu @rassobar]

A smart approach to study CTCF regulation: https://t.co/lqH9QpQkFG

[Rasim Barutcu @rassobar]

Great work! Congrats Sheq!

[SheqLab @ShechnerLab]

It's my pleasure to present the next big preprint from SheqLab! An exciting application of our O-MAP platform that I hope will transform the study of nuclear architecture.

If you've ever wanted to dissect the subnuclear "neighborhood" around an individual locus, read on! (1/30)

[Rasim Barutcu @rassobar]

Yes, impressive ...

https://t.co/p6sbMgLhyZ

[Rasim Barutcu @rassobar]

Glad to have contributed to this work! Great insights on inter-chromosomal interactions…
👇🏻👇🏻👇🏻

[Philipp Maass @NucleomeHunter]

🚨Inter-chromosomal contacts (‘kissing chromosomes’) organize human genome topology along a spatial gradient of genome activity (62 Hi-C datasets). Check https://t.co/a5izMPo6C4, @NatureComms, @4DNucleome, @The3DGenome, @humangenomeorg, @netscisociety, @Emblebi, @MoGen_Grads

[Rasim Barutcu @rassobar]

Introns? Splicing? Anyone? Take a sip.. or a gulp:

https://t.co/84pWq3eYlu

[Rasim Barutcu @rassobar]

I haven't been tweeting for a while, but I think this is worth breaking the silence...

Context transcription factors establish cooperative environments and mediate enhancer communication
by @BartDeplancke and his team.

https://t.co/NbWCfvNjKL

[Rasim Barutcu @rassobar]

What is happening?! Nuclear RNA forms an interconnected network of transcription-dependent and tunable microgels is happening... https://t.co/jubgKYyCz3

[Rasim Barutcu @rassobar]

mRNA secondary structure prediction using utility-scale quantum computers
https://t.co/2dyUOV6Mad

[bioRxiv Genomics @biorxiv_genomic]

Horizontal transmission of functionally diverse transposons is a major source of new introns https://t.co/ou8ArSc1rF #biorxiv_genomic

[Rasim Barutcu @rassobar]

@tangming2005 Even better: "The code has been uploaded to the Github repository (https://t.co/5iuGmkgRNM)" ... and then...

[Alejandro Montenegro @aemonten]

The "lncRNA" Malat1 is trafficked to the cytoplasm as a localized mRNA encoding a small peptide in neurons https://t.co/lgSiRSAwML

[Evgeny Kvon @evgenykvon]

How do enhancers work over distances that sometimes exceed megabases? Excited to share our work led by @gracecbower where we uncover a unique sequence signature globally associated with long-range enhancer-promoter interactions in developing limb buds: https://t.co/n0p7BdxSdq 1/

[Tomàs Montserrat Ayuso @tmontsay]

Excited to share with the single-cell community the most recent work of @tmontsay and @AEsteveCodina from @cnag_eu, something we think will be a game-changer in #scRNAseq quality control: https://t.co/MeVrelcG9n @biorxivpreprint
Get ready for the tweetorial!
1/10

[Rasim Barutcu @rassobar]

@FurqanMFazal with love?

[IMBA imbavienna.bsky.social @IMBA_Vienna]

Interested in computational biology? Join the lab of Anton Goloborodko as a #PhD student! The @golobor lab is offering a position as part of the #PhD Program Spring Call. Apply by April 15. https://t.co/4GdCsdvj2g #research #europe

[Chaolin Zhang @chaolinzhang]

Our most recent preprint on #DeltaSplice for quantitative prediction of splicing and splicing-altering mutations. Great collaboration with Tao Jiang Lab. Led by Chencheng Xu@Jiang lab and a former postdoc @BaoSuying in my lab. Software available soon-stay tuned! https://t.co/6FPDN1Rhxw

[Rasim Barutcu @rassobar]

Branched chemically modified poly(A) tails enhance the translation capacity of mRNA
https://t.co/2uvboExTRn

[Rasim Barutcu @rassobar]

Adding context: https://t.co/IHh667P3t3

[Rasim Barutcu @rassobar]

https://t.co/TPgNXh19WF