richhard

[Heng Li @lh3lh3]

minibwa v0.3 released with a few minor bug fixes and two missing bwa-mem features (XA tag for secondary hits and option -H to inject header lines). Also added the "mem" subcommand to mimic "bwa mem" CLI to some extent. https://t.co/G5LHerblpY

[Heng Li @lh3lh3]

Current bwa-mem users are encouraged to try minibwa as minibwa is planned to replace bwa-mem (but not minimap2).

Source code:
* minibwa in C: https://t.co/Uj45wP1bcY
* minibwa-rs (Rust rewrite by AI): https://t.co/BxODgiA3yq

[richhard @Richard69453033]

@JasonMitchellme @fenseanna 学下锤子，在右侧做个假眼，就对称了

[richhard @Richard69453033]

@superchen3x @CuiMao 用流览机打开

[richhard @Richard69453033]

@SDRPlay The first SDRconnect 1.0.5 release (Sept 4) doesn't have this issue

[richhard @Richard69453033]

@SDRPlay Thank you for this excellent app. I've encountered an issue where the audio volume gradually decreases after selecting MW or SW channels. Toggling the AGC switch on and off quickly temporarily restores the volume, but it fades again over time (on M1 Mac)

[richhard @Richard69453033]

@lambdaprog Wow, scale production in Shenzhen?

[richhard @Richard69453033]

@engineers_feed 游标卡尺 (Chinese)😁

[Wei Shen 沈 伟 @shenwei356]

The story behind Sylph, from @jim_elevator . It's quite inspiring to read.

https://t.co/aWvmyfZ0gS

[prog @lambdaprog]

Second round of our #Retweet game for this #BlackFriday. Check our generous 25% discount on all #Airspy products! You have no excuse to keep missing signals your radios can't see.

Get it here: https://t.co/t7IDhpT4LJ

[GenomeWeb @GenomeWeb]

Seven-Year Study Validates Metagenomic Sequencing for Diagnosing CNS Infections https://t.co/PGSVs55EYq

[Heng Li @lh3lh3]

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB https://t.co/DiRwZNHVVa

[prog @lambdaprog]

It's that time of the year again! Check our generous discounts over all the #Airspy products and participate in our Retweet Game.

15% Discount: https://t.co/t7IDhpT4LJ

#Follow, #Retweet and #Like to participate.

[NCBI @NCBI]

We are excited to announce cleaner nucleotide (nt) and protein (nr) BLAST databases with more accurate results! We now use NCBI quality assurance tools to systematically remove misleading sequences. Learn more: https://t.co/sjtStUnJFi #NCBICGR

[Andrej Karpathy @karpathy]

Have you ever wanted to train LLMs in pure C without 245MB of PyTorch and 107MB of cPython? No? Well now you can! With llm.c:
https://t.co/PoGTZIwASL

To start, implements GPT-2 training on CPU/fp32 in only ~1,000 lines of clean code. It compiles and runs instantly, and exactly matches the PyTorch reference implementation.

I chose GPT-2 to start because it is the grand-daddy of LLMs, the first time the LLM stack was put together in a recognizably modern form, and with model weights available.

[Heng Li @lh3lh3]

A blog post on the definition of pangenome: https://t.co/DssjgLzsaq. In short:

* To microbiologists: a non-redundant set of genes
* More general: a collection of well assembled genomes

[richhard @Richard69453033]

@leijun 荷包不鼓的掂量着买哦，小心成为苏乞儿(SU7er)哈哈😄

[Wei Shen 沈 伟 @shenwei356]

I've drafted some personal suggestions for improving the usability of bioinformatic (command-line) tools, hoping all tools will be easy to install and use.😀

Pull requests are welcome.
https://t.co/spdTTLSy2K

[richhard @Richard69453033]

@dwydbscx @leijun Not sure if the table is fake or not

[antisense. @razoralign]

BSAlign: a library for nucleotide sequence alignment https://t.co/SYkb3UyyTV