Sebastian Triesch

Biochemist | Düsseldorf | PhD Student @WeberLab_HHU @ceplas_1

[Sebastian Triesch @SebTriesch]

Last one from my PhD @WeberLab_HHU! We show bundle sheath function in C3-C4 intermediate Moricandia by single-nuclei sequencing.
Now off to new adventures at @WGGC_de

[bioRxiv Plant Bio @biorxiv_plants]

Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... https://t.co/wh97w4rrOv #biorxiv_plants

[bioRxiv Plant Bio @biorxiv_plants]

Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... https://t.co/wh97w4rrOv #biorxiv_plants

[Sebastian Triesch @SebTriesch]

#seb2024 @SEBiology was SO cool. Enjoyed Prague, met old friends and made new ones.

[Bioinformatics Advances @BioinfoAdv]

🚀 Exciting new research alert! Check out "Predmoter - Cross-species prediction of plant promoter and enhancer regions" 🌿. This deep learning tool predicts ATAC-seq and ChIP-seq read coverage from DNA sequences, reducing cost and time in plant genomics! Read more: https://t.co/xpajPtjStr 📘 #Bioinformatics #PlantScience #Genomics #AI @SebTriesch @SchluterUrte

[Andreas Weber @apmweber]

Peer-reviewed version finally out: Predmoter—cross-species prediction of plant promoter and enhancer regions https://t.co/MvswTqRMho

[Tina Schreier @TinaSchreier]

A week left to apply! 🚨 I’m looking for a research technician to join us @OxfordBiology and to help set up an efficient transformation pipeline in the C4 species Gynandropsis. Come work with us on leaf anatomy and photosynthesis! 🌱🪴 Find out more 👇 https://t.co/nuFLg0LC6u

[Tobias Jores @TobiasJores]

Our paper on the dissection of three light-responsive plant enhancers is out: https://t.co/fnsBgKKsHs
My favorite finding: the enhancers rely on suboptimal transcription factor binding sites. This is consistent with the beautiful work on animal enhancers from @EKFarley

[Sebastian Triesch @SebTriesch]

@jmugaldev @PlantScienceDBG @WeberLab_HHU Thanks José!

[Sebastian Triesch @SebTriesch]

I‘m proud to have received the Reinhold von Sengbusch Award by @PlantScienceDBG at last week‘s #mbp2024 conference! Thanks to my group @WeberLab_HHU for your great input preparing my talk!

[Bob Schmitz @Schmitz_Lab]

Great work @Pabster212! Investigating the cis-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution https://t.co/4YABwHGi0g

[Andreas Weber @apmweber]

Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species - Triesch - Plant Biology - Wiley Online Library https://t.co/MV7PEYfOw4 @SebTriesch @JBouvierPlants @Steve__Kelly @AlisandraDenton @SchluterUrte @vReichel_Deland

[Sebastian Triesch @SebTriesch]

Finally out, our paper on #transposons and their role in C3-C4 intermediate photosynthesis! https://t.co/chXMUB5TC8

Thanks to all involved! @WeberLab_HHU @apmweber @AlisandraDenton @vReichel_Deland @Steve__Kelly @JBouvierPlants

[JXB @jxbotany.bsky.social @JXBot]

'Brassicaceae display variation in efficiency of photorespiratory carbon-recapturing mechanisms' - Urte Schlüter, Jacques W Bouvier, Ricardo Guerreiro, Milena Malisic, Carina Kontny, Philipp Westhoff, Benjamin Stich, @apmweber 🌿
https://t.co/FADlhgjq7D

[Tobias Jores @TobiasJores]

I’m happy to share “Cooperativity and additivity in plant enhancers”, our newest paper out now on bioRxiv: https://t.co/1M0N0RCx9D
We dissected three light-responsive plant enhancers and found evidence for cooperative and additive interactions between functional enhancer regions.

[Devin O'Connor @oconnord]

When you work on a bunch of weird non-model species this kind of prediction is everything! Predmoter - Cross-species prediction of plant promoter and enhancer regions https://t.co/jNxrDwSUdP

[Sebastian Triesch @SebTriesch]

@Francois_Parcy @jaspar_db Yes, predmoter is perfect for this. It‘s fast, easy to use and it’s predictions correlated surprisingly well with TFBS predictions using @jaspar_db via fimo. Take some co-expression data in the loop and you can narrow down potentially binding TFs significantly.

[Andreas Weber @apmweber]

#Predmoter deep neural network. input: genome sequence FASTA; output: prediction of ATAC- and Histone H3 trimethylated at lysine 4 (H3K4me3) ChIP-seq. Documentation/ download from: https://t.co/1PcnNjT5pC
@AlisandraDenton @SebTriesch @WeberLab_HHU @SchluterUrte @vReichel_Deland

[Dominique Bergmann @stanfordstomata]

Predmoter - Cross-species prediction of plant promoter and enhancer regions https://t.co/kj0pj8Xtk0

[Irina Ćalić Fiebig @calic_irina]

The identification of CREs with Predmoter with only DNA sequence as input! 🤓

[Sebastian Triesch @SebTriesch]

You want to have cool ATAC and ChIP-seq data for your favorite plant genome but you don’t like pipetting? Check out Predmoter, our DL tool predicting open chromatin! (Yes, it works)

[bioRxiv Bioinfo @biorxiv_bioinfo]

Predmoter - Cross-species prediction of plant promoter and enhancer regions https://t.co/Y3ywShxelE #biorxiv_bioinfo