Spatial-Cell-ID

The Spatial-Cell-ID EquipEx+ platform provides equipment and expertise for single-cell spatiotemporal
transcriptomics (aka #spatialtranscriptomics)

[Spatial-Cell-ID @Spatial_Cell_ID]

📢We are recruiting!!
Spatial-Cell-ID is looking for a postdoctoral fellow or research engineer in image analysis applied to spatial transcriptomics.
Come join us in Lyon to analyze our beautiful MERFISH data!
https://t.co/9nPy4koBV7

[Yad Ghavi-Helm 🐾 @yad_ghavi]

🚨Preprint alert!
https://t.co/VF3WRkr5ye
Did you ever dream of generating spatial maps of #enhancer activity at #singlecell resolution in a multicellular organism using massively parallel enhancer-reporter assays?
Then spatial-scERA is the method for you!

[Spatial-Cell-ID @Spatial_Cell_ID]

@zaynanou @IGFLyon @FRM_officiel Congratulations Zayna and welcome at the IGFL!!! 😀

[Spatial-Cell-ID @Spatial_Cell_ID]

Join us on June 12th for a workshop on scRNA-seq
Registration (limited to 50 people) is free but mandatory
https://t.co/Lwix2OKSl9

[Spatial-Cell-ID @Spatial_Cell_ID]

Looking for an internship in #SpatialOMICs #scOMICs? Look no further!
👇

[Sergio Sarnataro @SarnataroSergio]

At @Spatial_Cell_ID we are looking for a motivated M2 student for an internship in Bioinformatics.

Find more information here:
https://t.co/Cs0KUKCWmk

Contact me if you have any questions!

#SpatialTranscriptomics #Job #WeAreHiring #SingleCell #bioinformatics #ENSLyon

[Spatial-Cell-ID @Spatial_Cell_ID]

@jeremygnfsk Bonjour,
il suffit de nous envoyer un mail à spatial-cell-id[arobase]https://t.co/4FctuUnSVg

[Yad Ghavi-Helm 🐾 @yad_ghavi]

It's tomorrow!!
We're expecting a full room for an exciting day of science and spatialOMICs discussions 🤩

[Spatial-Cell-ID @Spatial_Cell_ID]

@DenisSchapiro Looking forward to your visit!

[Spatial-Cell-ID @Spatial_Cell_ID]

Join us in Lyon for the annual Spatial-Cell-ID day!
We will welcome @DenisSchapiro (@UniHeidelberg) and Marco Grillo (@MatsNilssonLab @scilifelab) as keynote speakers.
Full program available here:
https://t.co/3jHRg5zMct

[Yad Ghavi-Helm 🐾 @yad_ghavi]

🔔Proud and excited to share our latest preprint!

We asked this simple question: do TADs really act as strong boundaries or can functional enhancer-promoter interactions be established across TAD boundaries?

https://t.co/aRXOA3hlgY

A 🧵on our main conclusions: (1/n)

[Spatial-Cell-ID @Spatial_Cell_ID]

Do you love #imaging, #spatialOMICs, and tech development?
Come join the @Spatial_Cell_ID team @ENSdeLyon !

[Nature Methods @naturemethods]

Using transcriptomic similarity and spatial coordinates, PASTE allows aligning and integrating spatial transcriptomics data generated from adjacent tissue slices. @RonZeira @benjraphael
https://t.co/2igB2Mas73

[s. @mssanjavickovic]

I’m so happy to present our spatial multi-omics work out today! https://t.co/HPT7xKaYZh #spatial #transcriptomics #citeseq #smomics

[Rong Fan @RongFan8]

Spatial-CUT&Tag! @ScienceMagazine, unfolding a new chapter of #spatialomics 🤗 . From my phenomenal postdoc @DengYanxiang of @YaleSEAS
@YaleBME, @yalepathology @YaleMed @YaleCancer
Thanks to awesome collaborators @GoCasteloBranco @marekbartosovic @PKukanja https://t.co/I6hM7oHCpa

[Danila @gtcaa]

It's great to see our article about the multimodal omics analysis framework muon out!
Many thanks to everyone who provided feedback along the way. 🙌
See a few highlights in the thread below.

[Developmental Cell @Dev_Cell]

New Resource online now at Dev Cell: A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants - https://t.co/gT81YpEIhX

[Giovanni Palla @g_palla1]

"Spatial components of molecular tissue biology", review wrote with @davidsebfischer @fabian_theis and Aviv Regev is out in @NatureBiotech. We outline biological questions and computational challenges in spatial analysis of tissues. 1/N https://t.co/HM81gle3ks

[Nikos Karaiskos @nu_karaiskos]

How to efficiently analyse & process large-scale spatial transcriptomics data from different techs?

We've developed Spacemake that does this and much more
https://t.co/HKAqVf7En0

[Luciano Martelotto 🛠🧬💻🇦🇺 @LGMartelotto]

Power analysis for spatial omics | bioRxiv https://t.co/vf7mAat1Wy

[Min Dai @artofbiology]

Spatially resolved transcriptomics and its applications | Nice review from Prof. Mingyao Li's group @DrMingyaoLi Statistical and machine learning methods for spatially resolved transcriptomics with histology https://t.co/uWjoQLateL